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BioLiP
>protein
APKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPM

The query sequence (length=56) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4xrm:B 64 55 0.9821 0.8594 1.0000 3.74e-37 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
2 6fqp:A 67 55 0.5179 0.4328 0.5273 1.90e-16 6fqp:B, 6fqq:A, 6fqq:B, 6fqq:D, 6fqq:E
3 1lfu:P 82 49 0.4464 0.3049 0.5102 8.50e-15 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
4 4egc:A 539 45 0.3929 0.0408 0.4889 2.59e-08
5 1mnm:C 77 44 0.2321 0.1688 0.2955 2.32e-04 1mnm:D
6 1akh:B 78 44 0.2321 0.1667 0.2955 2.64e-04 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
7 1le8:A 53 43 0.3036 0.3208 0.3953 0.004 1akh:A, 1yrn:A
8 2d5v:A 135 30 0.2500 0.1037 0.4667 0.010 2d5v:B, 8t0f:A, 8t11:A
9 7qdw:A 72 29 0.2321 0.1806 0.4483 0.043
10 5hod:A 61 30 0.2143 0.1967 0.4000 0.13 5hod:D
11 4rdu:D 62 42 0.3036 0.2742 0.4048 0.27 4rdu:A, 4xrs:I, 4xrs:G
12 1fjl:A 65 32 0.2321 0.2000 0.4062 0.29 1fjl:B, 1fjl:C
13 6e8c:A 135 33 0.2321 0.0963 0.3939 0.37 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
14 6e8c:A 135 31 0.1964 0.0815 0.3548 1.4 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
15 8ik5:C 67 46 0.2500 0.2090 0.3043 0.37 8ike:C, 8ilw:C
16 6kop:F 159 34 0.2321 0.0818 0.3824 0.47 6koq:F
17 8osb:E 62 32 0.2679 0.2419 0.4688 0.84
18 3cmy:A 60 34 0.2679 0.2500 0.4412 1.2
19 3a01:F 61 32 0.2321 0.2131 0.4062 1.8 3a01:B, 3lnq:A
20 4j19:A 77 25 0.1964 0.1429 0.4400 2.5 4j19:B
21 8g8e:X 140 35 0.2321 0.0929 0.3714 3.4 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
22 6b9v:A 254 17 0.1429 0.0315 0.4706 4.0 6b9v:B
23 5f1a:A 553 32 0.1964 0.0199 0.3438 4.9 5f19:A, 5f19:B, 5f1a:B, 5ikq:A, 5ikq:B, 5ikr:A, 5ikr:B, 5ikt:A, 5ikt:B, 5ikv:A, 5ikv:B, 5kir:A, 5kir:B
24 2y9h:M 193 27 0.1964 0.0570 0.4074 5.0 2y9h:K, 2y9h:O
25 3rkq:A 58 29 0.2321 0.2241 0.4483 6.1 3rkq:B
26 5flv:M 229 31 0.2321 0.0568 0.4194 6.8 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
27 6es3:K 72 29 0.2143 0.1667 0.4138 8.8 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
28 8bx1:A 127 35 0.2321 0.1024 0.3714 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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