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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
APKKRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRV
MGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRAT
PVELDFSQVEKA

The query sequence (length=172) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5ms0:F 181 178 0.9942 0.9448 0.9607 1.67e-122 6c6u:N, 8e3f:F, 8e5k:F, 8e5o:F, 8e6x:F, 8e6z:F, 8g31:u, 8g34:u, 6gov:G, 7py0:G, 7py1:G, 7py5:G, 7py8:G, 6tqn:G, 6tqo:G, 6vu3:AB, 6vyq:AB, 6vyr:AB, 6vys:AB, 6vyt:AB, 6vyu:AB, 6vyw:AB, 6vyx:AB, 6vyy:AB, 6vyz:AB, 6vz2:AB, 6vz3:AB, 6vz5:AB, 6vz7:AB, 6x6t:AB, 6x7f:AB, 6x7k:AB, 6x9q:AB, 6xdq:AB, 6xdr:AB, 6xgf:AB, 6xii:AB, 6xij:AB, 6z9p:G, 6z9q:G, 6z9r:G, 6ztj:CF, 6ztl:CF, 6ztn:CF
2 6xav:L 95 106 0.5523 1.0000 0.8962 2.28e-62
3 8ehq:G 110 110 0.2500 0.3909 0.3909 3.35e-21 8ej3:G, 8eoe:G, 8eof:G, 8exy:G
4 8e74:Z 122 100 0.2267 0.3197 0.3900 9.23e-20 8e82:Z
5 8syi:G 120 96 0.2093 0.3000 0.3750 6.31e-19 8urw:G
6 8f5g:C 175 177 0.2733 0.2686 0.2655 3.64e-09 8f5g:A
7 8f5g:B 144 168 0.2442 0.2917 0.2500 3.41e-05
8 4zn3:A 147 114 0.1686 0.1973 0.2544 0.020
9 2oog:D 268 160 0.2209 0.1418 0.2375 0.066 2oog:A, 2oog:B, 2oog:C, 2oog:E, 2oog:F
10 7uoo:x 504 52 0.0814 0.0278 0.2692 0.20 7ohq:x, 7oht:x, 7uqb:x, 7uqz:x, 7v08:x, 4wjv:C, 4wjv:D, 4wjv:A, 4wjv:B, 6ylg:x, 6ylh:x
11 8p5d:LZ0 118 36 0.0756 0.1102 0.3611 0.41 8p60:LZ0, 8p60:KZ0, 7qca:LZ0
12 8phk:P 162 150 0.2151 0.2284 0.2467 0.47 6c6s:D, 6c6t:D, 8pen:P, 8pfj:P, 8pid:P, 8pil:P, 8pim:P, 8upo:AB, 8upr:AB, 8uql:AB, 8uqm:AB, 8uqp:AB, 8ur0:AB, 8urh:AB, 8uri:AB, 8urx:AB, 8ury:AB
13 8pv4:CW 550 54 0.0988 0.0309 0.3148 1.4 8pv6:CW, 8pv8:CW
14 5mmi:K 203 29 0.0698 0.0591 0.4138 1.7 6eri:AJ, 5h1s:L, 5mlc:L, 5mmm:K, 4v61:BL, 5x8p:K, 5x8t:K
15 7xn7:B 1164 111 0.1628 0.0241 0.2523 4.8 6a5l:B, 6a5o:B, 6a5p:B, 6a5r:B, 6a5t:B, 6a5u:B, 8h0v:B, 8h0w:B, 8he5:B, 6inq:B, 6ir9:B, 6j4w:B, 6j4x:B, 6j4y:B, 6j4z:B, 6j50:B, 6j51:B, 8jh2:B, 8jh3:B, 8jh4:B, 7wbv:B, 7wbw:B, 7wbx:B, 5xog:B, 5xon:B, 7xse:B, 7xsx:B, 7xsz:B, 7xt7:B, 7xtd:B, 7xti:B, 8yfq:B, 8yfr:B
16 5x4z:N 1074 43 0.0814 0.0130 0.3256 5.0 5x4z:B, 5x51:B, 5x51:N
17 2q2r:A 370 45 0.0814 0.0378 0.3111 5.0 5brd:A, 5brd:B, 5bre:A, 5bre:B, 5brf:A, 5brf:B, 5brh:A, 5brh:B, 2q2r:B, 7s2p:A, 7s2p:B
18 6cus:A 87 28 0.0640 0.1264 0.3929 6.5 6cv8:A, 6cw4:A
19 8tnq:C 35 23 0.0640 0.3143 0.4783 9.1 8tnp:C, 8tnr:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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