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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
APKHPGKVFLDPSEVADHLAEYRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPCAEFIDW
CMANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQACKAAGLEMESGEPSSLPRPATHWPFKTAFQHHY
LVDEIPPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQADLSSFVF
SCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIMRSIIDDYGMCMQMQTPSLGDNPKANLDTMTLKVDGAPC
ERPDAEVQSAATHLHAGEAATVYFKSGRVVTIEVPVVPNLEA

The query sequence (length=362) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1okg:A 362 362 1.0000 1.0000 1.0000 0.0
2 5wqk:A 293 259 0.2044 0.2526 0.2857 4.22e-19 5wqj:A, 5wqj:B, 5wqk:B
3 4jgt:A 280 268 0.2293 0.2964 0.3097 8.68e-19 4jgt:B, 4jgt:C
4 1orb:A 293 264 0.2182 0.2696 0.2992 3.66e-17
5 1h4k:X 271 244 0.1796 0.2399 0.2664 3.41e-04
6 1yt8:A 525 143 0.0994 0.0686 0.2517 0.63
7 7roq:A 1831 84 0.0635 0.0126 0.2738 0.83
8 6ktv:A 431 188 0.1271 0.1067 0.2447 1.9 6h98:A, 6h99:A, 6h9a:A, 6ktw:A, 6ktx:A, 6ktz:A, 6ku1:A, 6ku1:B, 6ku2:A, 6ku2:E, 6kvw:A, 6kvw:B, 6kvy:A, 6kvz:A, 6kw0:A, 6kw0:B
9 7tbw:A 1928 60 0.0525 0.0099 0.3167 2.0
10 7tby:A 1788 60 0.0525 0.0106 0.3167 2.2 7tc0:A
11 2vf8:B 835 33 0.0331 0.0144 0.3636 3.2 2vf7:A, 2vf7:C
12 2vf7:B 813 33 0.0331 0.0148 0.3636 3.2 2vf8:A
13 6hux:A 369 102 0.0773 0.0759 0.2745 3.9 4yt4:A, 4yt5:A, 4yt5:B
14 4x3h:A 79 25 0.0304 0.1392 0.4400 9.6 8qf5:H, 6tno:A, 6tno:C, 6tno:E, 6tnq:A, 6tnq:C, 6tnq:E, 6tq0:A, 6tq0:C, 6tq0:E, 6tq0:G, 6tq0:I, 6tq0:K, 6tq0:M, 6tq0:O, 4x3i:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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