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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
APKCIECHINIEMDPVLHDVFKLQVCKQCSKEHPEKYALLTKTECKEDYFLTDPELNDEDLFHRLEKPNPHSGTFARMQL
FVRCEVEAFAFKKWGGEEGLDEEWQRREEGKAHRR

The query sequence (length=115) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5a39:B 115 115 1.0000 1.0000 1.0000 8.63e-84 5a39:A, 5a3d:A, 5a3d:B, 5g32:A, 5g32:B, 5g33:A, 5g33:B, 5g34:A, 5g34:B, 5g35:A, 5g35:B, 5lcl:A, 5lcl:B, 5lcm:A, 5lcm:B
2 8ebt:K 172 100 0.2783 0.1860 0.3200 1.76e-11 7ad8:G, 8ebu:K, 8ebx:K, 8eby:K, 6j44:A, 6lae:A, 6lae:B, 6ro4:G, 1xpa:A
3 6r2q:A 265 66 0.1739 0.0755 0.3030 0.006
4 4lmh:D 695 58 0.1478 0.0245 0.2931 1.5 4lmh:A, 4lmh:B, 4lmh:C
5 1lss:A 132 67 0.1739 0.1515 0.2985 1.6 1lss:B, 1lss:C, 1lss:D
6 6fz1:A 392 18 0.0870 0.0255 0.5556 2.4 6a12:A, 3auk:A, 7buk:A, 7buk:B, 5ce5:A, 2dsn:A, 2dsn:B, 7ey3:A, 7ey3:B, 4fdm:A, 4fkb:A, 4fkb:B, 4fmp:A, 4fmp:B, 6fz7:A, 6fz8:A, 6fz9:A, 6fza:A, 6fzc:A, 6fzd:A, 1ji3:A, 1ji3:B, 1ku0:A, 1ku0:B, 6s3g:A, 6s3j:A, 6s3v:A, 3umj:A, 3umj:B, 2w22:A, 4x6u:A, 4x71:A, 4x7b:A, 4x85:A, 5xpx:A, 5xpx:E, 2z5g:A, 2z5g:B
7 4v5i:AS 298 25 0.0957 0.0369 0.4400 9.9 4v5i:AT, 4v5i:AU, 4v5i:AV, 4v5i:AW, 4v5i:AX, 4v5i:BS, 4v5i:BT, 4v5i:BU, 4v5i:BV, 4v5i:BW, 4v5i:BX
8 6neq:z 207 70 0.1304 0.0725 0.2143 9.9 6nf8:z, 7p2e:8, 7po0:8, 7po1:8, 8qrm:8, 6rw4:8, 6rw5:8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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