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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
APIRVVSVPESDSFMSSVPDNSTPLYPKVVVPPRQVPGRFTNFIDVAKQTYSFCSISGKPYFEVTNTSGDEPLFQMDVSL
SAAELHGTYVASLSSFFAQYRGSLNFNFIFTGAAATKAKFLVAFVPPHSAAPKTRDEAMACIHAVWDVGLNSAFSFNVPY
SSPADFMAVYSAEATVVNVSGWLQVYALTALTSTDIAVNSKGRVLVAVSAGPDFSLRHPVDLPDKQ

The query sequence (length=226) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4ctf:D0 226 226 1.0000 1.0000 1.0000 6.47e-167 4ctf:D3, 4ctf:D1, 4ctf:DZ, 4ctf:D2, 4ctf:D4, 4ctf:D7, 4ctf:D5, 4ctf:D8, 4ctf:D6, 4ctf:D9, 4ctf:Dc, 4ctf:DA, 4ctf:DD, 4ctf:DB, 4ctf:DE, 4ctf:DC, 4ctf:DF, 4ctf:DI, 4ctf:DG, 4ctf:DJ, 4ctf:DH, 4ctf:DK, 4ctf:DN, 4ctf:DL, 4ctf:DO, 4ctf:DM, 4ctf:DP, 4ctf:DS, 4ctf:DQ, 4ctf:DT, 4ctf:DR, 4ctf:DU, 4ctf:DX, 4ctf:DV, 4ctf:DY, 4ctf:DW, 4ctf:Da, 4ctf:Dd, 4ctf:Db, 4ctf:De, 4ctf:Dh, 4ctf:Df, 4ctf:Di, 4ctf:Dg, 4ctf:Dj, 4ctf:Dm, 4ctf:Dk, 4ctf:Dn, 4ctf:Dl, 4ctf:Do, 4ctf:Dr, 4ctf:Dp, 4ctf:Ds, 4ctf:Dq, 4ctf:EA, 4ctf:ED, 4ctf:EB, 4ctf:EE, 4ctf:EC, 2wff:3, 2ws9:3, 2xbo:3
2 5nem:3 220 210 0.3761 0.3864 0.4048 1.84e-51
3 5cfc:B 232 225 0.3673 0.3578 0.3689 6.70e-48 5cfd:B
4 1tme:3 230 226 0.3761 0.3696 0.3761 1.84e-44
5 9fjc:3 238 231 0.2965 0.2815 0.2900 2.21e-23
6 8ay4:C 237 196 0.2699 0.2574 0.3112 2.41e-23 3dpr:C, 1fpn:3, 1v9u:3
7 5bnn:C 247 241 0.2788 0.2551 0.2614 1.99e-21 5bno:C, 5bnp:C, 6crp:B, 6cs3:B, 6cv1:B, 6cvb:B, 7ebr:B, 6mzi:B, 6wdt:C
8 6sk7:C 214 151 0.2257 0.2383 0.3377 3.67e-21
9 1aym:3 238 234 0.3053 0.2899 0.2949 3.95e-21 1ayn:3, 1c8m:3, 1ncr:C, 1nd2:C, 1nd3:C, 1qju:3, 1qjx:3, 1qjy:3
10 2hwd:3 238 161 0.2257 0.2143 0.3168 6.77e-21 2hwe:3, 2hwf:3, 1r1a:3
11 5osn:C 243 246 0.2920 0.2716 0.2683 4.40e-20 6t48:C, 6t4c:C
12 8ayz:C 235 224 0.2655 0.2553 0.2679 1.75e-19 1eah:3
13 6zck:C 238 229 0.2788 0.2647 0.2751 1.11e-18
14 6ppo:B 235 223 0.2655 0.2553 0.2691 8.58e-18 6psf:B
15 6gzv:C 238 240 0.2876 0.2731 0.2708 9.98e-18 6zcl:C
16 8ayx:C 238 224 0.2655 0.2521 0.2679 1.42e-16 8ayy:C, 5o5b:3, 5o5p:3
17 4aed:C 242 174 0.2035 0.1901 0.2644 4.47e-15
18 1z7z:3 192 153 0.1903 0.2240 0.2810 6.36e-14
19 8uux:B 515 61 0.0796 0.0350 0.2951 0.018 6c6q:A, 6c6q:B, 6e47:A, 6e47:B, 6e48:A, 6e48:B, 6h6l:A, 6h6l:B, 6h6l:C, 6h6l:D, 6h6m:A, 6h6m:B, 6h6m:C, 6h6m:D, 6p4j:A, 6p4j:B, 6p4j:C, 6p4k:A, 6p4k:B, 6p4k:C, 8uux:A, 8uv3:A, 8uv3:C, 6xw6:A, 6xw6:B, 6xw7:A, 6xw7:B, 6xw7:E, 6xw7:F
20 6otf:B 521 40 0.0619 0.0269 0.3500 0.18 6otf:A, 6otf:C, 6ouc:A
21 6gv4:C 241 96 0.0929 0.0871 0.2188 0.28
22 1tme:1 256 151 0.1947 0.1719 0.2914 1.0
23 5mjv:B 239 66 0.0708 0.0669 0.2424 1.4 4z92:B
24 4z71:B 163 79 0.0841 0.1166 0.2405 2.4 5kde:A, 5kdf:A, 1wcf:A, 4z70:A, 4z70:B, 4z70:C, 4z71:A, 4z71:C, 4z72:A, 4z73:A, 4z73:B, 4z73:C, 4z73:D, 4z73:F, 4z73:G, 4z73:E, 4z73:H, 4z73:I, 4z73:J, 4z73:K, 4z73:L, 4z74:A, 4z74:B, 4z74:C, 4z74:D, 4z74:F, 4z74:G, 4z74:E, 4z74:H, 4z74:I, 4z74:J, 4z74:K, 4z74:L
25 5mqr:A 1082 34 0.0531 0.0111 0.3529 2.7 5mqs:A
26 3u7r:A 182 95 0.1195 0.1484 0.2842 4.8 3u7r:B
27 6qe8:A 183 55 0.0664 0.0820 0.2727 7.3 2qz2:A
28 7wq4:R 282 53 0.0796 0.0638 0.3396 7.7 7xbd:A, 7xjk:F, 7xjl:F
29 8dgc:A 2028 53 0.0885 0.0099 0.3774 8.7 8dgc:B, 8dgc:C, 8dgc:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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