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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
APCQNHHCKHGKVCELDENNTPMCVCQDPTSCPAPIGEFEKVCSNDNKTFDSSCHFFATKCTLEGTKKGHKLHLDYIGPC
KYIPPCLDSELTEFPLRMRDWLKNVLVTLYERDEDNNLLTEKQKLRVKKIHENEKRLEAGDHPEKNYNMYIFPVHWQFGQ
LDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGIKQKDIDKDLVI

The query sequence (length=226) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1bmo:A 233 233 0.9956 0.9657 0.9657 4.66e-168 1bmo:B, 1nub:A, 1nub:B, 1sra:A, 2v53:A
2 7kbu:A 221 231 0.5841 0.5973 0.5714 3.33e-95 7kbu:B
3 2p6a:C 282 90 0.1239 0.0993 0.3111 2.17e-04 1lr7:A, 1lr8:A
4 2p6a:C 282 79 0.1106 0.0887 0.3165 0.074 1lr7:A, 1lr8:A
5 5joj:A 97 79 0.1062 0.2474 0.3038 0.016
6 7xzi:D 101 42 0.0664 0.1485 0.3571 0.37
7 2b5w:A 357 52 0.0531 0.0336 0.2308 5.2 2b5v:A, 2vwg:A, 2vwh:A, 2vwp:A, 2vwq:A
8 6jl2:A 401 46 0.0664 0.0374 0.3261 7.2 6jkz:A, 6jl2:B, 6jl2:C
9 6b03:A 896 22 0.0398 0.0100 0.4091 8.0 6b05:A, 6brs:A
10 8em4:A 3818 31 0.0575 0.0034 0.4194 8.3 8em4:B
11 5x9a:B 198 25 0.0442 0.0505 0.4000 9.6 5x9a:A, 5ypx:A, 5ypx:B
12 3hq2:B 497 58 0.0796 0.0362 0.3103 9.9 3hq2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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