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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
APAEILNGKEISAQIRARLKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEV
MKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGV
PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYV
PDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLE

The query sequence (length=295) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1a4i:B 295 295 1.0000 1.0000 1.0000 0.0 1a4i:A, 1dia:A, 1dia:B, 1dib:A, 1dib:B, 1dig:A, 1dig:B, 6ecp:A, 6ecp:B, 6ecq:A, 6ecq:B, 6ecr:A, 6ecr:B
2 6deb:B 284 290 0.4136 0.4296 0.4207 2.36e-71 3p2o:A, 3p2o:B
3 5o22:C 284 291 0.4237 0.4401 0.4296 3.64e-71 5o22:A, 5o22:B, 5o22:D
4 4cjx:A 297 292 0.4000 0.3973 0.4041 2.84e-70 4cjx:B
5 6v6y:A 277 292 0.4305 0.4585 0.4349 4.71e-68
6 4b4u:B 286 292 0.4068 0.4196 0.4110 1.57e-67 4b4u:A, 4b4v:A, 4b4v:B, 4b4w:A, 4b4w:B
7 7qei:A 291 302 0.4000 0.4055 0.3907 1.16e-58
8 6s4f:B 298 305 0.4068 0.4027 0.3934 8.21e-58 7ehj:A, 7ehj:B, 7ehm:A, 7ehm:B, 7ehn:A, 7ehn:B, 7ehv:A, 7ehv:B, 6jib:A, 6jib:B, 6jid:A, 6jid:B, 6kg2:A, 6kg2:B, 6s4a:A, 6s4a:B, 6s4e:A, 6s4f:A, 5tc4:A
9 3ngl:A 275 289 0.3186 0.3418 0.3253 5.24e-45 3ngl:C
10 1ee9:A 317 331 0.2678 0.2492 0.2387 1.50e-10
11 4v6i:BC 388 76 0.0712 0.0541 0.2763 3.2 8aaf:k, 8agt:k, 8agu:k, 8agv:k, 8agw:k, 8agx:k, 8agz:k, 5apn:B, 5apo:B, 7azy:l, 7b7d:LE, 8bip:LB, 8bjq:LB, 8bn3:L3, 8bqd:BA, 8bqx:BA, 7bt6:B, 7btb:B, 8ccs:FF, 8cdl:FF, 8cdr:FF, 8ceh:FF, 8cf5:FF, 8cg8:FF, 8cgn:FF, 8civ:FF, 8cku:FF, 8cmj:FF, 5dat:L3, 5dat:l3, 5dc3:L3, 5dc3:l3, 5dge:L3, 5dge:l3, 5dgf:L3, 5dgf:l3, 5dgv:L3, 5dgv:l3, 8eub:AB, 8evp:AB, 8evq:AB, 8evr:AB, 8evs:AB, 8evt:AB, 8ewb:AB, 8ewc:AB, 5fci:L3, 5fci:l3, 5fcj:L3, 5fcj:l3, 6ft6:B, 5gak:F, 6gq1:B, 6gqb:B, 6gqv:B, 5h4p:B, 6hd7:F, 8hfr:CD, 6hhq:k, 6hhq:CE, 5i4l:L3, 5i4l:l3, 6i7o:BA, 6i7o:YA, 5it7:BB, 3j6x:L3, 3j6y:L3, 3j77:L3, 3j78:L3, 3jct:B, 5jcs:B, 5juo:G, 5jup:G, 5jus:G, 5jut:G, 5juu:G, 8k2d:LB, 8k82:LB, 5lyb:L3, 5lyb:l3, 5m1j:B5, 6m62:B, 5mc6:BA, 5mei:k, 5mei:CE, 7mpi:AB, 7mpj:AB, 6n8j:B, 6n8k:B, 6n8l:B, 6n8m:E, 6n8n:E, 6n8o:E, 7n8b:AB, 5ndg:L3, 5ndg:l3, 5ndv:L3, 5ndv:l3, 5ndw:L3, 5ndw:l3, 7nrc:LE, 7nrd:LE, 5obm:L3, 5obm:l3, 7of1:B, 7oh3:B, 7ohq:B, 6oig:B, 5on6:k, 5on6:CE, 7osa:uL3, 7osm:uL3, 8p8m:LG, 8p8n:LG, 8p8u:LG, 8pfr:LG, 6q8y:BA, 6qik:C, 6qt0:C, 6qtz:C, 6r84:F, 6r86:F, 6r87:F, 6ri5:C, 7rr5:LB, 6rzz:C, 6s05:C, 6s47:AE, 6snt:i, 6sv4:BA, 6sv4:YA, 6sv4:ZA, 6t4q:LB, 5t62:E, 5t6r:E, 6t7i:LB, 6t7t:LB, 6t83:By, 6t83:Ea, 5tbw:k, 5tbw:CE, 6tb3:BA, 5tga:L3, 5tga:l3, 5tgm:L3, 5tgm:l3, 6tnu:BA, 7too:AL03, 7top:AL03, 4u3m:L3, 4u3m:l3, 4u3n:L3, 4u3n:l3, 4u3u:L3, 4u3u:l3, 4u4n:L3, 4u4n:l3, 4u4o:L3, 4u4o:l3, 4u4q:L3, 4u4q:l3, 4u4r:L3, 4u4r:l3, 4u4u:L3, 4u4u:l3, 4u4y:L3, 4u4y:l3, 4u4z:L3, 4u4z:l3, 4u50:L3, 4u50:l3, 4u51:L3, 4u51:l3, 4u52:L3, 4u52:l3, 4u53:L3, 4u53:l3, 4u55:L3, 4u55:l3, 4u56:L3, 4u56:l3, 4u6f:L3, 4u6f:l3, 7ug6:B, 7uoo:B, 7uqb:B, 7uqz:B, 6uz7:AB, 7v08:B, 4v4b:BC, 4v7f:C, 4v7h:BC, 4v7r:BC, 4v7r:DC, 4v88:BB, 4v88:DB, 4v8t:B, 4v8y:BB, 4v8z:BB, 4v91:B, 6woo:B, 6xiq:B, 6xir:B, 8y0u:LB, 6ylg:B, 6ylh:B, 6ylx:B, 7z34:B, 6z6j:LB, 6z6k:LB, 7zpq:BB, 7zrs:BB, 7zs5:BD, 7zuw:BB, 7zux:EB, 7zw0:LF
12 2i99:A 312 75 0.0746 0.0705 0.2933 3.6 4bv9:A, 4bv9:B, 4bva:A, 4bva:B, 2i99:B
13 6yly:B 360 76 0.0712 0.0583 0.2763 3.7 6elz:B, 6em5:B, 7oht:B, 7ohv:B, 7u0h:B
14 8v87:B 336 76 0.0712 0.0625 0.2763 3.8 6c0f:B, 6em1:B, 6em4:B, 7nac:B, 7ohp:B, 7ohr:B, 7ohs:B, 7ohu:B, 7ohw:B, 7ohx:B, 7ohy:B, 7r7a:B, 8v83:B, 8v84:B, 5z3g:F
15 6t3e:B 325 35 0.0542 0.0492 0.4571 4.6 6t3e:A
16 6k7l:A 992 42 0.0576 0.0171 0.4048 4.8 6k7i:A, 6k7j:A, 6k7k:A, 6k7m:A, 6k7n:A
17 4whx:A 306 82 0.0678 0.0654 0.2439 5.5 4whx:C, 4whx:D, 4whx:E
18 5t4z:L 213 33 0.0407 0.0563 0.3636 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218