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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
APADSLYSRMGGEAAVEKAVDVFYERIVADPQLAPFFANVDMKKQRRKQVAFMTYVFGGSGAYEGRDLGASHRRLIREQG
MNHHHFDLVAAHLDSTLQELGVAQELKAEAMAIVASARPLIFG

The query sequence (length=123) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4xdi:A 127 123 1.0000 0.9685 1.0000 3.56e-88 6cii:A, 4xdi:B
2 1dly:A 121 119 0.4472 0.4545 0.4622 3.15e-34 1uvx:A
3 2hz1:A 123 112 0.4309 0.4309 0.4732 9.85e-34 2hz2:A, 2hz3:A, 1mwb:A, 1rtx:A, 1s69:A, 1s6a:A
4 2ksc:A 123 114 0.4228 0.4228 0.4561 1.48e-31 4l2m:A, 4l2m:B, 4max:A, 4max:B, 4max:C
5 6bme:A 127 116 0.4228 0.4094 0.4483 5.90e-27 6bme:B
6 3aq5:A 117 121 0.3415 0.3590 0.3471 4.55e-24 3aq5:B, 3aq6:A, 3aq6:B, 3aq7:A, 3aq7:B, 3aq8:A, 3aq8:B, 3aq9:A, 3aq9:B
7 1s56:B 135 111 0.3333 0.3037 0.3694 1.58e-20 5ab8:A, 2gkm:A, 2gkm:B, 2gkn:A, 2gkn:B, 2gl3:A, 2gl3:B, 2gln:A, 2gln:B, 1idr:A, 1idr:B, 1rte:A, 1rte:B, 1s56:A, 1s61:A, 1s61:B
8 1dlw:A 116 114 0.3333 0.3534 0.3596 1.11e-19 1uvy:A
9 6td7:A 126 119 0.3089 0.3016 0.3193 3.16e-18
10 5d1v:A 121 111 0.2846 0.2893 0.3153 3.12e-09 5d1v:B
11 2bkm:A 128 59 0.1951 0.1875 0.4068 6.72e-09 2bkm:B
12 5v3u:A 131 57 0.1707 0.1603 0.3684 9.29e-08 5v3t:A, 5v3t:B, 5v3u:B, 5v3v:A, 5v3v:B
13 1ux8:A 118 52 0.1707 0.1780 0.4038 3.00e-07
14 8tls:A 116 119 0.2276 0.2414 0.2353 1.43e-05 8tls:B, 7tt9:A, 7tt9:B, 7tt9:C, 7tt9:D, 8ugz:A, 8ugz:B, 8ugz:C, 8ugz:D, 8uzu:A, 8uzu:B, 8uzu:C, 8uzu:D, 8vij:A, 8vij:B, 8vij:C, 8vij:D, 8vsh:A, 8vsh:B, 8vsh:C, 8vsh:D, 8w3a:A, 8w3a:B, 8w3a:C, 8w3a:D
15 4uzv:A 129 99 0.2195 0.2093 0.2727 1.52e-04 2bmm:A
16 2ig3:A 127 63 0.1382 0.1339 0.2698 0.016 2ig3:B
17 1tu9:A 131 76 0.2033 0.1908 0.3289 0.73
18 6bwd:A 771 57 0.1220 0.0195 0.2632 1.2 6bwd:B, 6bwd:D, 6bwd:C
19 4nfu:A 619 56 0.1463 0.0291 0.3214 3.2 7xey:A
20 2gqk:A 173 84 0.1707 0.1214 0.2500 4.4 2ggt:A, 2ggt:B, 2gql:A, 2gqm:A, 2gt6:A, 2hrf:A, 2hrn:A
21 7xjp:A 580 52 0.1545 0.0328 0.3654 4.9
22 1ngk:B 127 59 0.1138 0.1102 0.2373 5.5 1ngk:A, 1ngk:C, 1ngk:D, 1ngk:E, 1ngk:F, 1ngk:G, 1ngk:H, 1ngk:I, 1ngk:J, 1ngk:K, 1ngk:L, 2qrw:A, 2qrw:B, 2qrw:C, 2qrw:D, 2qrw:E, 2qrw:F, 2qrw:G, 2qrw:H, 2qrw:I, 2qrw:J, 2qrw:K, 2qrw:L
23 8uhe:K 593 40 0.1138 0.0236 0.3500 5.8
24 2xyk:B 130 61 0.1463 0.1385 0.2951 6.7 2xyk:A
25 5um2:A 316 46 0.1301 0.0506 0.3478 7.2
26 6is1:B 121 67 0.1301 0.1322 0.2388 7.5 6is1:A, 6is1:C, 6is1:D, 6is1:E, 6is1:F, 6is1:G, 6is1:H, 6is2:A, 6is2:B, 6is2:C, 6is2:D, 6is3:C
27 1q2l:A 937 24 0.0813 0.0107 0.4167 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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