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BioLiP
>protein
ANSTVLSFCAFAVDPAKAYKDYLASGGQPITNCVKMLCTTGTGQAITVTPEANMDQESFGGASCCLYCRCHIDHPNFCDL
KGKYVQIPTTCANDPVGFTLRNTVCTVCGMWKGYGCS

The query sequence (length=117) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5c8s:A 133 121 1.0000 0.8797 0.9669 4.34e-81 8a23:B, 7bq7:B, 8bsd:B, 8bzn:A, 8bzv:B, 8c0g:B, 7c2i:B, 7c2j:B, 8c5m:B, 5c8s:C, 5c8t:A, 5c8t:C, 5c8u:A, 5c8u:C, 7diy:A, 7egq:H, 7egq:U, 7eiz:H, 9emj:B, 9eml:B, 9emv:B, 9eun:B, 8f4s:B, 8f4y:B, 9fw2:A, 2fyg:A, 9fz4:A, 9fzk:A, 2g9t:A, 2g9t:B, 2g9t:C, 2g9t:D, 2g9t:E, 2g9t:F, 2g9t:G, 2g9t:H, 2g9t:I, 2g9t:J, 2g9t:K, 2g9t:L, 2g9t:M, 2g9t:N, 2g9t:O, 2g9t:P, 2g9t:Q, 2g9t:R, 2g9t:S, 2g9t:T, 2g9t:U, 2g9t:V, 2g9t:W, 2g9t:X, 2ga6:A, 2ga6:B, 2ga6:C, 2ga6:D, 2ga6:E, 2ga6:F, 2ga6:G, 2ga6:H, 2ga6:I, 2ga6:J, 2ga6:K, 2ga6:L, 2ga6:M, 2ga6:N, 2ga6:O, 2ga6:P, 2ga6:Q, 2ga6:R, 2ga6:S, 2ga6:T, 2ga6:U, 2ga6:V, 2ga6:W, 2ga6:X, 9gny:B, 9grp:B, 9grq:B, 7jhe:B, 7jib:B, 7jpe:B, 7jyy:B, 7jyy:D, 7jz0:B, 7jz0:D, 7koa:B, 7l6r:B, 7l6t:B, 7lw3:B, 7lw4:B, 7mc5:M, 7mc6:M, 7n0b:A, 7n0c:A, 7n0d:A, 7n0d:C, 7n0d:E, 7n0d:G, 5nfy:M, 5nfy:N, 5nfy:O, 5nfy:P, 7orr:A, 7oru:A, 7orv:A, 7orw:A, 8osx:B, 8ot0:B, 8oto:B, 8otr:B, 8ov1:B, 8ov2:B, 8ov3:B, 8ov4:B, 7r1t:B, 7r1u:B, 3r24:B, 8rv4:B, 8rv5:B, 8rv6:B, 8rv7:B, 8rv8:B, 8rv9:B, 8rva:B, 8rvb:B, 8rzc:B, 8rzd:B, 8rze:B, 8s8w:B, 8s8x:B, 8tyj:B, 7ult:B, 7ult:D, 6w4h:B, 6w61:B, 6w75:B, 6w75:D, 6wjt:B, 6wjt:D, 6wkq:B, 6wkq:D, 6wks:BBB, 6wq3:B, 6wrz:B, 6wvn:B, 6xkm:B, 2xyq:B, 2xyr:B, 2xyv:B, 6yz1:B, 6zct:A, 6zpe:A
2 5ynf:B 125 121 0.6239 0.5840 0.6033 1.11e-47 5yn5:B, 5yn6:B, 5yn8:B, 5ynb:B, 5yni:B, 5ynj:B, 5ynm:B, 5ynn:B, 5yno:B, 5ynp:B, 5ynq:B
3 7nh7:B 120 119 0.5385 0.5250 0.5294 2.34e-41
4 7o81:BK 39 31 0.2564 0.7692 0.9677 2.02e-16
5 7o80:BK 36 18 0.1453 0.4722 0.9444 1.39e-06 7o7y:BK, 7o7z:BK
6 7bqo:A 451 29 0.1026 0.0266 0.4138 8.7
7 4mla:B 460 29 0.0855 0.0217 0.3448 9.1
8 4ml8:A 488 29 0.0855 0.0205 0.3448 9.2 4ml8:B, 4ml8:C, 4ml8:D, 4mla:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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