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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ANPYERGPNPTESMLEARSGPFSVSEERASRFGADGFGGGTIYYPRENNTYGAIAISPGYTGTQSSIAWLGERIASHGFV
VIAIDTNTTLDQPDSRARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPDLKAAIPLTPWHLNKS
WRDITVPTLIIGAEYDTIASVTLHSKPFYNSIPSPTDKAYLELDGASHFAPNITNKTIGMYSVAWLKRFVDEDTRYTQFL
CPGPRTGLLSDVEEYRSTCPF

The query sequence (length=261) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6aid:A 261 261 1.0000 1.0000 1.0000 0.0 3wyn:A, 3wyn:B
2 5lui:A 264 261 0.8238 0.8144 0.8238 4.31e-164 5luk:A, 5lul:A, 7xtt:B, 7xtv:A, 7xtv:B
3 7qjt:A 267 261 0.8008 0.7828 0.8008 1.40e-156
4 5zrq:A 263 262 0.6360 0.6312 0.6336 1.17e-123 7cef:A, 7cef:B, 7ceh:A, 7cts:A, 8ibl:A, 8ibl:B, 8ibm:A, 8ibm:B, 4wfj:A, 4wfk:A, 5zno:A, 5zno:B, 5zrr:A, 5zrs:A
5 8xho:A 262 262 0.6245 0.6221 0.6221 8.94e-119 8xho:B
6 7yko:A 259 262 0.6207 0.6255 0.6183 2.16e-118
7 8a2c:A 268 261 0.6207 0.6045 0.6207 2.30e-115 8a2c:B
8 8bra:B 259 263 0.6284 0.6332 0.6236 1.75e-105 8brb:A, 8brb:B, 7w6c:A, 7w6c:B, 7w6o:A, 7w6o:B, 7w6q:B
9 7vvc:B 263 242 0.5556 0.5513 0.5992 2.16e-103 8jmo:A, 8jmo:B, 8jmp:A, 8qrj:A, 7vvc:A, 7vve:A, 7vve:B, 7w45:A, 7w45:B
10 8ian:A 270 271 0.5134 0.4963 0.4945 4.33e-85 8ian:B
11 7vmd:A 266 266 0.4866 0.4774 0.4774 2.19e-78 7vme:A
12 7vpb:A 270 270 0.4981 0.4815 0.4815 8.59e-78 7vpb:B
13 8d1d:A 262 255 0.5096 0.5076 0.5216 9.89e-75 8d1d:C, 8h5m:A, 5xh2:A, 5xh3:A, 7xtw:A
14 3f98:A 377 198 0.1609 0.1114 0.2121 9.95e-05 3f97:A, 3f97:B, 3f98:B, 3f98:C, 3f9c:A, 3f9c:B, 5i8p:A, 5i8p:B, 5i9i:A, 5i9i:B, 5jad:A, 5jah:A, 5jal:A, 5jan:A, 5jao:A, 5jap:A, 5jar:A, 5jas:A, 5jat:A, 5jau:A, 5lp1:A, 5lyy:A, 5lz2:A, 5lz4:A, 5lz5:A, 5lz7:A, 5lz8:A, 5lz9:A, 6m06:A, 6m06:B, 6m07:A, 6m07:B, 6m08:B, 5ye7:B, 5ye7:A, 5ye8:B, 5ye8:A, 5ye9:A, 5ye9:B, 5yea:A, 5yea:B
15 8fjd:A 298 104 0.1073 0.0940 0.2692 0.027 8fjd:B
16 6y0f:C 722 96 0.1073 0.0388 0.2917 0.085 6y0f:A, 6y0f:B, 6y0f:D
17 3e4d:A 278 28 0.0498 0.0468 0.4643 0.14 3e4d:B, 3e4d:C, 3e4d:E, 3e4d:D, 3e4d:F
18 1q0r:A 297 51 0.0766 0.0673 0.3922 0.19 1q0z:A
19 3fcx:B 275 26 0.0460 0.0436 0.4615 0.24 3fcx:A
20 4ke8:C 249 106 0.1073 0.1124 0.2642 0.34 4ke6:A, 4ke7:A, 4ke7:B, 4ke8:A, 4ke8:B, 4ke8:D, 4ke9:A, 4ke9:B, 4ke9:C, 4ke9:D
21 7cof:A 320 105 0.1188 0.0969 0.2952 0.56 7cog:A, 7cog:B, 7cog:C, 7cog:D, 1hqd:A, 2lip:A, 3lip:A, 4lip:D, 4lip:E, 5lip:A, 2nw6:A, 1oil:A, 1oil:B, 1ys1:X, 1ys2:X
22 6p5v:A 373 122 0.1111 0.0777 0.2377 0.58 6b5q:A, 6b5q:B, 6bg3:A, 6bg5:A, 4i7p:A, 7kwa:A, 6p5w:A, 3tdu:B, 3tdu:A, 3tdz:A, 3tdz:B, 5ufi:A, 5ufi:B, 5ufi:C, 5ufi:D, 5v83:A, 5v86:A, 5v88:A, 6xol:A, 6xom:A, 6xon:A, 6xoo:A, 6xop:A, 6xoq:A
23 7b7h:A 370 43 0.0728 0.0514 0.4419 0.94 6szo:A
24 8qd8:B 413 113 0.1073 0.0678 0.2478 0.94 8qd8:A, 8qd9:A, 8qd9:B
25 6syu:A 402 43 0.0728 0.0473 0.4419 0.97 6grw:A, 6gs0:A, 6syr:A, 6syv:A, 6sz0:A, 6sz4:A, 6t0e:A, 6t0e:B, 6t0i:A
26 6vhd:A 255 51 0.0613 0.0627 0.3137 1.1 7l0a:A, 7l0a:B, 6vhd:B, 6vhd:C, 6vhd:D, 6vhe:A, 6vhe:B, 6vhe:C, 6vhe:D, 6wcx:A, 6wcx:B, 6wcx:C, 6wcx:D
27 3fcy:A 317 37 0.0498 0.0410 0.3514 1.3 3fcy:C
28 1zzm:A 259 40 0.0690 0.0695 0.4500 1.4
29 3i6y:A 278 42 0.0536 0.0504 0.3333 1.6 3i6y:B, 3s8y:A
30 6fi2:A 375 30 0.0498 0.0347 0.4333 2.1
31 1ss9:A 280 39 0.0536 0.0500 0.3590 2.3 1g9r:A, 1ga8:A
32 7auy:B 245 98 0.1226 0.1306 0.3265 2.4
33 7xrt:A 268 39 0.0613 0.0597 0.4103 2.4 7xrt:B, 7xrt:C, 7xrt:D, 7xrt:E, 7xrt:F, 7xrt:G, 7xrt:H, 7xrt:I, 7xrt:J, 7xrv:A, 7xrv:B, 7xrv:D, 7xrv:E, 7xrv:F, 7xrv:G, 7xrv:H, 7xrv:I, 7xrv:J
34 7at3:A 295 98 0.1226 0.1085 0.3265 2.9 7at3:B, 7at4:A, 7atd:B, 7atf:A, 7atf:B, 7atq:A, 7auy:A, 7av5:AAA, 7av5:BBB, 7nb5:A
35 8qcl:A 390 51 0.0575 0.0385 0.2941 3.6 8qcl:B, 8qef:B
36 2rau:A 350 88 0.0881 0.0657 0.2614 4.6
37 7v8u:A 258 118 0.1034 0.1047 0.2288 4.7
38 2gsk:A 590 56 0.0651 0.0288 0.3036 5.0 3m8d:A, 1nqg:A, 1nqh:A, 1ujw:A
39 1hl7:A 279 42 0.0498 0.0466 0.3095 7.3 1hl7:B
40 6ftj:1 162 72 0.0613 0.0988 0.2222 7.5
41 7p0y:A 278 20 0.0421 0.0396 0.5500 8.2 7p0y:B
42 8c6e:A 124 44 0.0575 0.1210 0.3409 9.1 3q8i:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218