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BioLiP
>protein
ANPSDPAVQRIIDVTKPSRSNIKTTLIEDVEPLMHSIAAGVEFIEVYGSDSSPFPSELLDLCGRQNIPVRLIDSSIVNQL
FKGERKAKTFGIARVPRPARFGDIASRRGDVVVLDGVKIVGNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRGY
VFSLPVVLSGREEAIAFIRDSGMQLMTLKADGDISVKELGDNPDRLALLFGSEKGGPSDLFEEASSASVSIPMMSQTESL
NVSVSLGIALHERIDRNLAAN

The query sequence (length=261) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3gyq:A 261 261 1.0000 1.0000 1.0000 0.0 3gyq:B
2 3nk7:B 267 258 0.7471 0.7303 0.7558 4.35e-138 3nk7:A
3 5kzk:A 262 152 0.2069 0.2061 0.3553 7.71e-17 5kzk:B, 5l0z:A, 5l0z:B
4 4x3l:A 260 169 0.2031 0.2038 0.3136 4.39e-14 4x3l:B, 4x3m:A, 4x3m:B
5 1x7p:A 265 154 0.1839 0.1811 0.3117 4.59e-07 1x7p:B
6 6yxy:EF 302 168 0.1801 0.1556 0.2798 3.26e-06 6yxx:EF
7 1v2x:A 191 149 0.1571 0.2147 0.2752 8.45e-06
8 4pzk:A 159 143 0.1456 0.2390 0.2657 1.39e-05 4pzk:B
9 2ha8:A 159 146 0.1494 0.2453 0.2671 1.91e-05 2ha8:B
10 7edc:A 236 163 0.1724 0.1907 0.2761 9.64e-05
11 5co4:B 161 146 0.1609 0.2609 0.2877 1.31e-04 5co4:A
12 7oi6:1 257 146 0.1226 0.1245 0.2192 0.034 7oi6:z
13 8w9u:A 152 142 0.1341 0.2303 0.2465 0.23 8w9u:B
14 1mxi:A 156 148 0.1494 0.2500 0.2635 0.31
15 6yxy:EE 433 64 0.0766 0.0462 0.3125 0.41 7aoi:XO, 6yxx:EE
16 4jal:A 156 144 0.1264 0.2115 0.2292 0.41 4jal:B
17 6tej:B 585 87 0.1188 0.0530 0.3563 1.2
18 7e3q:B 159 140 0.1456 0.2390 0.2714 1.6
19 3dd7:A 123 73 0.0766 0.1626 0.2740 2.0 3dd7:C
20 3n4k:A 163 149 0.1303 0.2086 0.2282 2.3
21 4aqh:B 383 24 0.0383 0.0261 0.4167 2.6 1a7c:A, 4aqh:A, 4aqh:C, 7aqf:A, 7aqg:A, 1dvm:A, 1dvm:C, 1dvm:D, 4g8o:D, 4g8r:A, 4g8r:B, 4ic0:A, 4ic0:C, 3q02:A, 3q02:B, 3q03:A, 3q03:B, 3r4l:A, 3ut3:B
22 4h3s:A 585 111 0.1073 0.0479 0.2523 3.8
23 1nb3:I 98 55 0.0575 0.1531 0.2727 6.7 1nb3:J, 1nb3:K, 1nb3:L, 1nb5:I, 1nb5:J, 1nb5:K, 1nb5:L
24 3etn:B 198 40 0.0575 0.0758 0.3750 8.0 3etn:A, 3etn:C, 3etn:D
25 4yiv:A 374 63 0.0651 0.0455 0.2698 8.3
26 4xbo:A 228 151 0.1226 0.1404 0.2119 9.1 4cne:A, 4cne:B, 4xbo:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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