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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ANFIAEFFGHRVYPEVVSTEAARNDQATGTCPFLTAAKLVETSCVKAETSRGVCVVNTAVDNERYDWLVCPNRALDPLFM
SAASRKLFGYGPTEPLQFIAAPTLADQAVRDGIREWLDRGVHVVAYFQEKLGGELSISKTDSSPEFSFDWTLAEVESIYP
VPKIKRYGVLEIQTMDFHGSYKHAVGAIDIALVEGIDFHGWLPTPAGRAALSKKMEGPNLSNVFKRTFYQMAYKFALSGH
QRCAGTGFAIPQSVWKSWLRHLANPTLIDNGDGTFSLGDTRNDSENAWIFVFELDPDTDASPRPLAPHLEIRVNVDTLID
LALRESPRAALGPSGPVATFTDKVEARMLRFWP

The query sequence (length=353) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3c25:A 354 353 1.0000 0.9972 1.0000 0.0 3bvq:A, 3bvq:B, 3c25:B
2 5bxa:A 414 32 0.0425 0.0362 0.4688 0.51
3 5y28:A 268 51 0.0453 0.0597 0.3137 0.78 5y2d:A
4 2xyk:B 130 36 0.0397 0.1077 0.3889 3.2 2xyk:A
5 5ko6:A 285 92 0.0680 0.0842 0.2609 4.9 6awe:A, 6axa:A, 6b2l:A, 6b37:A, 6b3l:A, 6b4q:A, 6b4t:A, 6b56:A, 6b6k:A, 6b71:A, 6b7i:A, 6bb7:A, 6bfv:A, 6bhb:A, 6bi1:A, 6bi9:A, 6bif:A, 6bj6:A, 6bj7:A, 5ko5:A, 5tbs:A, 5tbt:A, 5tbu:A, 5tbv:A
6 7dwx:A 605 58 0.0538 0.0314 0.3276 5.0 7dwx:C, 8i92:B, 8i92:D, 8i93:B, 8i93:D, 6m17:A, 6m17:C, 8wby:A, 8wby:D, 8wbz:A, 8wbz:D
7 7og0:B 498 55 0.0453 0.0321 0.2909 6.4 7ofw:A, 7ofz:A, 7og0:A
8 3fd5:B 355 44 0.0397 0.0394 0.3182 7.2 3fd5:A, 3fd6:A, 3fd6:B
9 7old:C 813 60 0.0482 0.0209 0.2833 7.6
10 3a1n:A 315 39 0.0397 0.0444 0.3590 7.9 3a1n:B, 3a4v:A, 3a4v:B, 3a9w:A, 3a9w:B, 3ajr:A, 3ajr:B
11 4nh0:A 861 62 0.0482 0.0197 0.2742 8.0 4n1a:A, 4n1a:B, 4n1a:C, 4n1a:E, 4nh0:B
12 5bwe:B 69 26 0.0312 0.1594 0.4231 8.8 5bwe:F, 4pkf:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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