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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGD
REAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMD
DIRESVAELAYYREHFIKL

The query sequence (length=179) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2igi:A 180 179 1.0000 0.9944 1.0000 1.03e-134 2igi:B, 7vh4:C
2 6n6a:A 181 178 0.6760 0.6685 0.6798 2.22e-92 6n6c:A, 6n6d:A, 6n6e:A, 6n6f:A, 6n6g:A, 6n6h:A
3 7va2:A 180 178 0.6648 0.6611 0.6685 1.48e-87 7va3:A, 7va3:B, 7va6:A, 7va6:B
4 5cy4:C 184 171 0.6201 0.6033 0.6491 2.51e-82 5cy4:A, 5cy4:B, 5cy4:D, 5cy4:E, 5cy4:F
5 3tr8:A 184 178 0.6089 0.5924 0.6124 6.22e-82 3tr8:B
6 6rk6:C 178 176 0.5587 0.5618 0.5682 2.86e-77 6rk6:A, 6rk6:B
7 6a4d:A 184 179 0.5642 0.5489 0.5642 6.05e-75 6a4d:B, 6a4e:A, 6a4e:C, 6a4f:A, 6a4f:B
8 6sty:A 198 173 0.4860 0.4394 0.5029 6.44e-62 6j7y:B, 6j7z:B, 6j80:B, 6n6i:A, 6n6i:B, 6n6j:A, 6n6j:B, 6n6k:A, 6n6k:B, 6rcl:A, 6rcn:A, 6sty:B, 6sty:E
9 7wik:C 196 172 0.4693 0.4286 0.4884 2.15e-51
10 6rcl:B 148 178 0.4078 0.4932 0.4101 1.29e-44 6j7y:A, 6j7z:A, 6j80:A, 6rcn:B
11 4xiv:B 252 105 0.1564 0.1111 0.2667 0.030 4xiv:A
12 2ch4:A 320 105 0.1564 0.0875 0.2667 0.063 2ch4:B, 1i58:A, 1i58:B, 1i59:A, 1i59:B, 1i5a:A, 1i5a:B, 1i5b:A, 1i5b:B, 1i5c:A, 1i5c:B, 1i5d:A, 6mi6:A, 6mi6:B, 6mi6:C, 6mi6:D, 8oyq:B, 8oyq:A, 8oyz:B, 8oyz:A, 8oz9:B, 8oz9:A, 8p3n:B, 8p3n:A, 8p3r:A, 8p3r:B, 8p59:A, 8p59:B, 8pf2:B, 8pf2:A
13 8ei4:A 365 83 0.1341 0.0658 0.2892 0.17
14 6d9m:A 326 24 0.0670 0.0368 0.5000 0.54
15 8p0o:A 622 87 0.1117 0.0322 0.2299 0.76 8p0o:B, 8p0p:A, 8p0p:B, 8p0q:A, 8p0q:B
16 4js4:A 468 51 0.0726 0.0278 0.2549 1.7 3c94:A, 4hcb:A, 4hcb:B, 4hcc:A, 4hcc:B, 3hl8:A, 3hp9:A, 4jrp:A, 4jrp:B, 4jrq:A, 4jrq:B, 4js4:B, 4js5:A, 4js5:B
17 2qxf:A 433 51 0.0726 0.0300 0.2549 1.7
18 7p97:AAA 203 53 0.0726 0.0640 0.2453 1.8 7p97:BBB
19 4o1j:A 197 33 0.0670 0.0609 0.3636 2.5 4o1j:B
20 7byi:A 463 35 0.0615 0.0238 0.3143 4.4 8aql:A, 8aql:B, 8aql:C, 8aql:D, 9box:A, 9box:C, 9box:B, 9box:D, 7byi:B, 8fjt:A, 8fjt:B, 8fju:A, 8fju:B, 8gks:A, 8gks:B, 8gkt:A, 8gkt:B, 8gku:A, 8gku:B, 8gkw:A, 8gkw:B, 8gky:A, 8gky:B, 8gkz:A, 8gkz:B, 6m5o:A, 6m5o:B, 6qvg:A, 6qvg:B, 6qvl:A, 6qvl:B, 8t4o:A, 8t4o:B, 8t4p:A, 8t4p:B, 8tlc:A, 8tlc:B, 5v7i:A, 5v7i:B
21 1ae1:B 258 47 0.0726 0.0504 0.2766 6.5 1ae1:A
22 6cd1:A 452 35 0.0559 0.0221 0.2857 7.8 6ccz:A, 6ccz:B, 6cd1:B, 6cd1:C, 6cd1:D, 6cd1:E, 6cd1:F, 6cd1:G, 6cd1:H
23 1h0h:A 977 82 0.1173 0.0215 0.2561 8.1 1h0h:K
24 5yws:B 234 27 0.0615 0.0470 0.4074 9.5 3b6o:A, 3b6o:B, 3b6o:C, 3b6o:D, 3b6p:A, 3b6p:B, 3b6p:C, 3b6p:D, 8hcc:A, 8hcc:B, 8hcc:C, 8hcc:D, 8hcd:B, 8hcd:C, 8hcd:D, 8hcd:E, 8hce:B, 8hcf:B, 8hcg:A, 8hch:A, 8hch:B, 8hch:C, 8hch:D, 2ioc:B, 2ioc:A, 3mxi:B, 3mxi:A, 3mxm:A, 3mxm:B, 2o4g:A, 2o4g:B, 2o4g:C, 2o4g:D, 2o4i:A, 2o4i:B, 2oa8:B, 2oa8:A, 3u3y:A, 3u3y:B, 3u6f:B, 3u6f:A, 7u8y:A, 7u8y:B, 4ynq:A, 4ynq:C, 4ynq:D, 4ynq:B, 5yws:A, 5ywt:B, 5ywt:A, 5ywu:A, 5ywu:B, 5ywv:A, 5ywv:B
25 8szq:A 861 52 0.1006 0.0209 0.3462 9.6 3llm:A, 3llm:B, 8szp:A, 8szp:B, 8szr:A, 8szs:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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