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BioLiP
>protein
ANENILKLKLYRSLGVILDLENDQVLINRDGNIDILPLDNNLSDFYKTKYIWERLGK

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5t6j:A 59 59 1.0000 0.9661 0.9661 6.74e-33 4geq:D, 4geq:B
2 7kdf:C 95 56 0.8772 0.5263 0.8929 4.44e-28
3 5f9e:A 336 36 0.2632 0.0446 0.4167 0.33 5f9e:B, 2jed:A, 2jed:B, 4q9z:A, 4q9z:B, 4ra5:A, 4ra5:B, 1xjd:A
4 1i24:A 392 29 0.1754 0.0255 0.3448 1.9 1i2b:A, 1i2c:A, 1qrr:A
5 8ro2:C 908 44 0.2456 0.0154 0.3182 5.0 7aav:r, 7abf:r, 7abg:r, 7abi:r, 6ah0:C, 6ahd:C, 8c6j:C, 8ch6:b, 7dvq:C, 6ff4:B, 6ff7:B, 9fmd:C, 8h6e:5C, 8h6j:5C, 8h6k:5C, 8h6l:5C, 8i0p:C, 8i0r:C, 8i0s:C, 8i0t:C, 8i0u:C, 8i0v:C, 8i0w:C, 6icz:C, 6id0:C, 6id1:C, 8q7q:C, 8q7v:C, 8q7w:C, 8q7x:C, 8q91:C, 6qdv:C, 8qp8:C, 7qtt:b, 6qw6:5C, 6qx9:5C, 8rc0:C, 7w59:C, 7w5a:C, 7w5b:C, 5xjc:C, 8y6o:D, 5yzg:C, 5z56:C, 5z57:C, 5z58:C, 6zym:B
6 6cbq:A 234 27 0.1754 0.0427 0.3704 7.8 6cbq:B, 6cc0:A, 6cc0:B, 3szt:A, 3szt:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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