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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AMVNKNKEGLNIDGKEVLAGSTNYYELTWDLDQYKGDKSSKEAIQNGFYYVDDYPEEALDVRPDLVKVADEKGNQVSGVS
VQQYDSLEAAPKKVQDLLKKANITVKGAFQLFSADNPEEFYKQYVATGTSLVITDPMTVKSEFGKTGGKYENKAYQIDFG
NGYATEVVVNNVPKITPKKDVTVSLDPTSENLDGQTVQLYQTFNYRLIGGLIPQNHSEELEDYSFVDDYDQAGDQYTGNY
KTFSSLNLTMKDGSVIKAGTDLTSQTTAETDATNGIVTVRFKEDFLQKISLDSPFQAETYLQMRRIAIGTFENTYVNTVN
KVAYASNTVRTTT

The query sequence (length=333) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7l0o:A 479 324 0.9309 0.6472 0.9568 0.0 7l0o:B, 2woy:A, 2wqs:A, 2wza:A
2 6e3f:A 497 325 0.6697 0.4487 0.6862 1.63e-166 3opu:A, 3opu:B, 3opu:C, 3opu:D, 3opu:E, 3opu:F, 3qe5:A, 3qe5:B
3 4tsh:B 485 324 0.6096 0.4186 0.6265 1.69e-148
4 4ofq:A 337 329 0.3514 0.3472 0.3556 5.72e-54 4ofq:B
5 8beg:A 650 334 0.2913 0.1492 0.2904 7.09e-31 8beg:B
6 8beg:A 650 215 0.1862 0.0954 0.2884 2.52e-11 8beg:B
7 4mng:E 228 59 0.0541 0.0789 0.3051 0.35 4mng:F
8 3slk:A 747 41 0.0511 0.0228 0.4146 1.0 3slk:B
9 5d2e:A 485 34 0.0300 0.0206 0.2941 2.1
10 5y5w:B 195 78 0.0601 0.1026 0.2564 2.6 7ea1:C, 6i8b:B, 6i8b:E, 6i8l:B, 6i8y:A, 6qpl:B
11 6qti:A 1038 62 0.0541 0.0173 0.2903 3.0 1d4o:A, 1djl:A, 1djl:B, 1pt9:A, 1pt9:B, 6qti:B, 6que:A, 6que:B, 1u31:A, 1u31:B
12 5mru:A 173 101 0.0871 0.1676 0.2871 3.4
13 4ayl:A 210 64 0.0541 0.0857 0.2812 4.0
14 6fbk:A 83 37 0.0360 0.1446 0.3243 4.1
15 2dy1:A 660 43 0.0420 0.0212 0.3256 4.9 1wdt:A
16 3cuf:A 314 102 0.0661 0.0701 0.2157 5.0 3cug:A, 3cuh:A, 3cui:A, 3cuj:A, 1exp:A, 1fh7:A, 1fh8:A, 1fh9:A, 1fhd:A, 2his:A, 1j01:A, 2xyl:A
17 1jtd:B 273 39 0.0420 0.0513 0.3590 7.0
18 4n0y:L 212 26 0.0360 0.0566 0.4615 7.9
19 4go4:A 487 41 0.0300 0.0205 0.2439 9.6 4go4:B, 4go4:C, 4go4:D, 4go4:E, 4go4:F, 4go4:G, 4go4:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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