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BioLiP
>protein
AMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQMPAWWMGEPWILK
KYIDEVFTDGHGRLYQSDGRTRSDATKGYGSGGLIQGKTYMLSVTWNAPREAFTDPEQFFHGVGVDGVYLPFHKANQFLG
MKPLPTFMCNDVIKQPDIEGDIARYRQHLAENVNS

The query sequence (length=195) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3rpe:A 196 195 1.0000 0.9949 1.0000 2.27e-149 3rpe:B
2 2b3d:A 193 189 0.6564 0.6632 0.6772 8.83e-99 2b3d:B
3 4gi5:B 261 158 0.2462 0.1839 0.3038 5.97e-10 4gi5:A
4 5lva:A 174 150 0.1897 0.2126 0.2467 8.48e-09 5lva:B
5 4fgl:D 233 145 0.2154 0.1803 0.2897 2.89e-07 5buc:A, 5buc:B, 2bzs:A, 2bzs:B, 4fgj:A, 4fgj:B, 4fgk:A, 4fgk:B, 4fgl:A, 4fgl:B, 4fgl:C, 3fw1:A, 3g5m:A, 3g5m:B, 3gam:A, 3gam:B, 4gqi:A, 4gqi:B, 4gr9:A, 4gr9:B, 5lbt:A, 5lbt:B, 5lbu:A, 5lbu:B, 5lbw:A, 5lbw:B, 5lby:A, 5lby:B, 5lbz:A, 5lbz:B, 3nfr:A, 3nfr:B, 3nhf:A, 3nhf:B, 3nhj:A, 3nhj:B, 3nhk:A, 3nhk:B, 3nhl:A, 3nhl:B, 3nhp:A, 3nhp:B, 3nhr:A, 3nhr:B, 3nhs:A, 3nhs:B, 3nhu:A, 3nhu:B, 3nhw:A, 3nhw:B, 3nhy:A, 3nhy:B, 3o2n:A, 3o2n:B, 7o4d:A, 7o4d:B, 3o73:A, 3o73:B, 3ovm:A, 3ovm:B, 3owh:A, 3owh:B, 3owx:A, 3owx:B, 3ox1:A, 3ox1:B, 3ox2:A, 3ox2:B, 3ox3:A, 3ox3:B, 2qmy:A, 2qmy:B, 2qmz:A, 2qmz:B, 4qod:A, 4qod:B, 4qoe:A, 4qoe:B, 4qof:A, 4qof:B, 4qog:A, 4qog:B, 4qoh:A, 4qoh:B, 4qoi:A, 4qoi:B, 4qoj:A, 4qoj:B, 1qr2:A, 1qr2:B, 2qr2:A, 2qr2:B, 2qwx:A, 2qwx:B, 2qx4:A, 2qx4:B, 2qx6:A, 2qx6:B, 2qx8:A, 2qx8:B, 2qx9:A, 2qx9:B, 1sg0:A, 1sg0:B, 3te7:A, 3te7:B, 3tem:A, 3tem:B, 3tzb:A, 3tzb:B, 3tzb:C, 3tzb:D, 4u7f:A, 4u7f:B, 4u7g:A, 4u7g:B, 4u7h:A, 4u7h:B, 3uxe:A, 3uxe:B, 3uxh:A, 3uxh:B, 4xdg:A, 4xdg:B, 4xdh:A, 4xdh:B, 1xi2:A, 1xi2:B, 4zvk:A, 4zvk:B, 4zvl:A, 4zvl:B, 4zvm:A, 4zvm:B, 4zvn:A, 4zvn:B, 1zx1:A, 1zx1:B
6 3l9w:B 357 160 0.2308 0.1261 0.2812 4.05e-07 3eyw:A, 3eyw:B, 3l9w:A
7 3l9x:A 336 160 0.2308 0.1339 0.2812 5.06e-07 3l9x:B
8 4f8y:A 196 84 0.1538 0.1531 0.3571 5.46e-07 4f8y:B, 4f8y:C, 4f8y:D, 3lcm:A, 3lcm:B, 3lcm:C, 3lcm:D
9 3f2v:A 174 117 0.1538 0.1724 0.2564 3.28e-04
10 1dxq:A 273 77 0.1282 0.0916 0.3247 0.008 1dxq:C, 1dxq:B, 1dxq:D, 1qrd:A, 1qrd:B
11 5ea2:C 276 77 0.1282 0.0906 0.3247 0.019 5a4k:A, 5a4k:B, 5a4k:C, 5a4k:D, 8c9j:A, 8c9j:B, 8c9j:C, 8c9j:D, 4cet:A, 4cf6:A, 4cf6:B, 1d4a:A, 1d4a:B, 1d4a:D, 1d4a:C, 1dxo:A, 1dxo:C, 1dxo:B, 1dxo:D, 5ea2:A, 5ea2:E, 5ea2:G, 5eai:A, 5eai:B, 5eai:C, 5eai:D, 5eai:E, 5eai:F, 5eai:G, 5eai:H, 5eai:I, 5eai:J, 5eai:K, 5eai:L, 5eai:M, 5eai:N, 2f1o:A, 2f1o:C, 2f1o:B, 2f1o:D, 2f1o:E, 2f1o:F, 2f1o:G, 2f1o:H, 5fuq:A, 5fuq:B, 6fy4:A, 6fy4:B, 6fy4:C, 6fy4:D, 1gg5:A, 1gg5:C, 1gg5:B, 1gg5:D, 1h66:A, 1h66:C, 1h66:B, 1h66:D, 1h69:A, 1h69:C, 1h69:B, 1h69:D, 3jsx:A, 3jsx:B, 3jsx:C, 3jsx:D, 3jsx:E, 3jsx:G, 3jsx:F, 3jsx:H, 1kbo:A, 1kbo:C, 1kbo:B, 1kbo:D, 1kbq:A, 1kbq:C, 1kbq:B, 1kbq:D, 6llc:A, 6llc:D, 6llc:B, 6llc:F, 6llc:C, 6llc:E, 6llc:G, 6llc:H, 6llc:I, 6llc:J, 6llc:K, 6llc:L, 8ok0:A, 8ok0:D, 8ok0:B, 8ok0:C, 8pqn:A, 8pqn:B, 8pqn:C, 8pqn:D, 1qbg:A, 1qbg:B, 1qbg:C, 1qbg:D, 8rfm:A, 8rfm:B, 8rfm:C, 8rfm:D, 8rfn:A, 8rfn:B, 8rfn:C, 8rfn:D
12 7bc4:B 2054 40 0.0718 0.0068 0.3500 0.024
13 3w78:A 210 68 0.0872 0.0810 0.2500 0.11 3w78:B, 3w78:D, 3w78:C, 3w79:A, 3w79:B, 3w79:C, 3w79:D, 3w7a:A, 3w7a:B, 3w7a:C, 3w7a:D
14 7tui:B 2033 40 0.0667 0.0064 0.3250 0.12 6u5v:B, 6u5w:B
15 6qu0:A 211 44 0.0821 0.0758 0.3636 0.18 6qu0:B
16 8ps2:G 2036 39 0.0615 0.0059 0.3077 0.60 3hmj:G, 3hmj:H, 3hmj:I, 8prv:G, 8prw:G, 8prw:J, 8prw:I, 8prw:H, 8prw:K, 8prw:L, 8ps1:G, 8ps9:G, 8psa:G, 8psf:G, 8psg:G, 8psj:G, 8psk:G, 8psl:G, 8psm:G, 8psp:G, 6ql5:I, 6ql5:G, 6ql5:H, 6ql5:L, 6ql5:J, 6ql5:K, 6ql6:G, 6ql6:H, 6ql6:I, 6ql6:J, 6ql6:K, 6ql6:L, 6ql9:G, 6ql9:H, 6ql9:I, 6ql9:J, 6ql9:K, 6ql9:L, 6ta1:G, 6ta1:C, 6ta1:E, 6ta1:L, 6ta1:H, 6ta1:J, 6u5t:G, 6u5u:G, 2uv8:G, 2uv8:H, 2uv8:I, 2vkz:G, 2vkz:H, 2vkz:I
17 6jxn:B 212 63 0.0923 0.0849 0.2857 0.64 6jxn:A, 6jxn:C, 6jxn:D, 6jxs:A, 6jxs:B, 6jxs:C, 6jxs:D
18 3w77:A 207 45 0.0667 0.0628 0.2889 0.65 3w77:B
19 2hpv:A 207 69 0.0872 0.0821 0.2464 0.79 2hpv:B, 2hpv:C, 2hpv:D
20 7ogp:D 510 72 0.1026 0.0392 0.2778 0.82
21 8que:D 654 72 0.1026 0.0306 0.2778 0.87 7ogr:D
22 6avj:A 92 78 0.1128 0.2391 0.2821 1.2 6avj:B, 6avj:C
23 8adq:A 252 56 0.0872 0.0675 0.3036 1.3 7nnk:A, 7nnk:B, 7nr1:A, 7nuj:A, 7nuj:B, 7o5r:A, 7o5r:B, 7o5v:AAA, 7o5v:BBB, 7o5w:AAA, 7o5w:BBB, 7o87:AAA, 7o87:BBB, 7o9r:AAA, 7o9r:BBB, 7obu:A, 7obu:B, 6r62:A
24 4ac5:M 323 48 0.0923 0.0557 0.3750 2.7 4cas:C, 3d38:M, 1dxr:M, 6et5:M, 3g7f:M, 2i5n:M, 2jbl:M, 5m7j:C, 5m7k:C, 5m7l:C, 5nj4:M, 5o4c:M, 5o64:M, 1prc:M, 2prc:M, 3prc:M, 5prc:M, 6prc:M, 7prc:M, 7q7p:MMM, 7q7q:MMM, 1r2c:M, 3t6d:M, 3t6e:M, 1vrn:M, 2wjm:M, 2wjn:M, 2x5u:M, 2x5v:M, 6zhw:M, 6zi4:M, 6zi5:M, 6zi6:M, 6zi9:M, 6zia:M, 6zid:M
25 2iw3:B 980 43 0.0615 0.0122 0.2791 3.8 7b7d:EF, 2iw3:A, 2iwh:A, 2iwh:B
26 7zke:E 1623 62 0.1026 0.0123 0.3226 5.0
27 1t0i:A 185 57 0.0974 0.1027 0.3333 7.3 1t0i:B
28 4ypo:A 325 47 0.0718 0.0431 0.2979 8.0 4ypo:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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