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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AMRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAGY
GGVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYA
ANNISKGIVKYANSGSVRLGGLICNSRNTDREDELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADEY
RALARKVVDNKLLVIPNPITMDELEELLMEFGIMEVEDESIVG

The query sequence (length=283) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2afh:E 289 283 1.0000 0.9792 1.0000 0.0 2afh:F, 2afi:E, 2afi:F, 2afi:G, 2afi:H, 2afi:M, 2afi:N, 2afi:O, 2afi:P, 2c8v:A, 1de0:A, 1de0:B, 8dfc:E, 8dfc:F, 8dfd:E, 8dfd:F, 8dfd:G, 8dfd:H, 1fp6:A, 1fp6:B, 1fp6:C, 1fp6:D, 1g1m:A, 1g1m:B, 1g20:E, 1g20:F, 1g20:G, 1g20:H, 1g21:E, 1g21:F, 1g21:G, 1g21:H, 1g5p:A, 1g5p:B, 1m1y:E, 1m1y:F, 1m1y:G, 1m1y:H, 1m1y:M, 1m1y:N, 1m1y:O, 1m1y:P, 1m34:E, 1m34:F, 1m34:G, 1m34:H, 1m34:M, 1m34:N, 1m34:O, 1m34:P, 1n2c:E, 1n2c:F, 1n2c:G, 1n2c:H, 6n4j:A, 6n4j:B, 6n4k:A, 6n4k:B, 6n4l:A, 6n4m:A, 1nip:B, 1nip:A, 2nip:A, 2nip:B, 6o0b:A, 6o0b:B, 6q93:A, 6q93:B, 6q93:C, 6q93:D, 6q93:E, 6q93:F, 6q93:G, 6q93:H, 1rw4:A, 7t4h:A, 8tc3:A, 8tc3:B, 7tne:A, 7tpn:A, 7tpo:A, 7tpv:A, 7tpw:A, 7tpx:A, 7tpy:A, 7tpz:A, 7tq0:A, 7tq9:A, 7tqc:A, 7tqe:A, 7tqf:A, 7tqh:A, 7tqi:A, 7tqj:A, 7tqk:A, 7ut8:E, 7ut8:F, 7ut9:E, 7ut9:F, 7uta:E, 7uta:F, 7uta:G, 7uta:H, 4wza:E, 4wza:F, 4wza:G, 4wza:H, 4wzb:E, 4wzb:F, 4wzb:G, 4wzb:H, 1xcp:A, 1xcp:B, 1xcp:C, 1xcp:D, 1xd8:A, 1xd8:B, 1xd9:A, 1xd9:B, 1xdb:A, 1xdb:B
2 1cp2:A 269 271 0.6678 0.7026 0.6974 4.23e-140 1cp2:B
3 8q5x:A 280 275 0.6325 0.6393 0.6509 2.86e-131 8q5x:C, 8q5x:B, 8q5x:D
4 6nzj:A 273 275 0.6290 0.6520 0.6473 1.57e-130 6nzj:B
5 7qqa:A 273 272 0.6219 0.6447 0.6471 1.78e-127 7qqa:B, 7qqa:C, 7qqa:D
6 8q5w:G 281 272 0.6184 0.6228 0.6434 7.20e-127 8q5w:A, 8q5w:B, 8q5w:C, 8q5w:D, 8q5w:E, 8q5w:F, 8q5w:H, 8q5w:I, 8q5w:J, 8q5w:K, 8q5w:L
7 8q5t:A 280 272 0.6184 0.6250 0.6434 1.21e-125 8q50:A, 8q5t:B, 8q5t:C, 8q5t:D, 8q5v:A, 8q5v:B, 8q5v:C, 8q5v:D, 8q5v:E, 8q5v:F, 8q5v:G, 8q5v:H, 8q5v:J, 8q5v:K, 8q5v:L, 8q5v:M
8 8oie:D 272 272 0.5936 0.6176 0.6176 1.16e-122 8oie:E, 8oie:I, 8oie:J
9 2ynm:B 268 271 0.3852 0.4067 0.4022 1.25e-52 2ynm:A
10 3fwy:A 268 268 0.3392 0.3582 0.3582 3.00e-44 3fwy:B, 6uyk:A, 6uyk:B, 6uyk:C, 6uyk:D
11 2bej:A 245 36 0.0671 0.0776 0.5278 6.98e-06 2bek:A, 2bek:B, 2bek:C, 2bek:D
12 7ejw:A 274 250 0.2085 0.2153 0.2360 9.31e-06 7ejw:B, 5j1j:A, 5j1j:B, 8p53:A, 8p53:B, 8pb9:A, 8pb9:B
13 1ion:A 243 251 0.2191 0.2551 0.2470 1.44e-05
14 4rz3:A 244 255 0.2226 0.2582 0.2471 1.91e-05 4rz3:B
15 6iub:A 264 36 0.0636 0.0682 0.5000 7.64e-05 6iub:B, 6iuc:A, 6iuc:B, 6iuc:C, 6iuc:D, 6iud:B, 6iud:C, 6iud:D, 6iud:A, 8jmj:A, 8jmj:B, 8jmj:C, 8jmj:D, 8jmk:A, 8jmk:B, 8jmk:C, 8jmk:D, 8jml:A, 8jml:B
16 1g3q:A 237 245 0.1979 0.2363 0.2286 2.20e-04 1g3r:A
17 4v02:A 244 28 0.0565 0.0656 0.5714 0.002 4v02:B, 4v03:A, 4v03:B
18 5k5z:D 314 54 0.0601 0.0541 0.3148 0.003 5k5z:A, 5u1j:B, 5u1j:A, 5u1j:C, 5u1j:D
19 5if9:A 251 32 0.0530 0.0598 0.4688 0.005 5if9:B, 5ihp:A, 5ihp:B
20 1ii0:B 553 99 0.1060 0.0542 0.3030 0.006 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
21 1ii0:B 553 36 0.0530 0.0271 0.4167 0.11 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
22 3kb1:A 243 38 0.0636 0.0741 0.4737 0.028 3kb1:B, 6oby:A, 6oby:B
23 5zme:A 638 34 0.0495 0.0219 0.4118 0.050 5zmf:A
24 8bx8:C 3947 47 0.0671 0.0048 0.4043 0.056 7k58:C, 7k5b:C, 7kek:C
25 5u1g:D 211 54 0.0636 0.0853 0.3333 0.10 4dzz:A, 4dzz:B, 4e03:A, 4e03:B, 4e07:A, 4e07:B, 4e09:A, 5u1g:B, 5u1g:C, 5u1g:A
26 5aup:I 241 43 0.0601 0.0705 0.3953 0.14 5aun:B, 5auo:B, 5aup:B, 3vx3:A, 3vx3:B
27 4jyb:A 323 73 0.0742 0.0650 0.2877 0.17 8dpb:A, 8dpb:B, 4jyb:B, 4jyc:D, 4lc1:A, 4lc1:B, 2qm7:A, 2qm7:B
28 3tk1:B 319 51 0.0671 0.0596 0.3725 0.17
29 3q9l:A 257 28 0.0424 0.0467 0.4286 0.19 3q9l:B, 3r9i:A, 3r9i:B, 3r9i:C, 3r9i:D, 3r9j:A, 3r9j:B
30 4jlv:A 228 76 0.0742 0.0921 0.2763 0.27
31 3fcr:A 458 77 0.0707 0.0437 0.2597 0.31
32 3cwq:A 206 36 0.0601 0.0825 0.4722 0.43 3cwq:B
33 6z0p:A 242 28 0.0495 0.0579 0.5000 0.52 6z0p:B
34 3nxs:A 306 50 0.0671 0.0621 0.3800 0.54
35 3iev:A 302 43 0.0671 0.0629 0.4419 0.64 7c1o:A, 3r9w:A, 3r9x:A
36 6g2g:B 273 134 0.1272 0.1319 0.2687 0.65 6g2g:A
37 3tk1:A 293 47 0.0601 0.0580 0.3617 1.2
38 3kjg:A 254 39 0.0495 0.0551 0.3590 1.3 3kjg:B, 3kjh:A, 3kji:A, 3kji:B
39 6riq:C 254 31 0.0530 0.0591 0.4839 1.4 6riq:D, 6riq:G, 6riq:J, 6riq:K, 6riq:M, 6riq:N, 6riq:Q, 6riq:R, 6riq:U, 6riq:V
40 6kyk:C 169 77 0.0813 0.1361 0.2987 1.8 3brw:D, 1c1y:A, 7c7i:A, 7c7i:B, 7c7j:A, 7c7j:B, 4dxa:A, 1gua:A, 4hdo:B, 4hdq:B, 5kho:C, 5kho:D, 3kuc:A, 4kvg:A, 4kvg:C, 6kyk:D, 6kyk:E, 6kyk:F, 4m8n:E, 4m8n:F, 4m8n:G, 4m8n:H, 6oq3:B, 6oq4:B, 8su8:B, 8t09:B, 8t7v:B, 6uzk:B, 3x1w:A, 3x1x:A, 3x1y:A, 3x1z:A, 3x1z:B
41 8k1o:B 215 44 0.0565 0.0744 0.3636 1.8 8k1o:C, 8k1p:B, 8k1p:C
42 8gju:F 332 73 0.0671 0.0572 0.2603 2.7 8gju:D, 8gju:A, 8gju:B
43 7dut:A 220 41 0.0565 0.0727 0.3902 2.8 7dv3:A, 7dv3:B, 7dwr:A, 7dwr:D, 7dwr:B, 7dwr:C
44 4iok:A 557 29 0.0495 0.0251 0.4828 2.9 1fp7:A, 1fpm:A, 1fpm:B, 4iok:B, 4iol:A, 4iol:B, 4jjz:A, 4jjz:B, 4jki:A, 3qus:A, 3qus:B
45 5tvk:B 242 36 0.0495 0.0579 0.3889 4.2 3k9g:A, 5tvk:A
46 5mji:A 252 30 0.0424 0.0476 0.4000 4.3 5mld:A, 5mld:B, 5mld:C, 5mld:D, 5mld:E, 5mld:F, 5mld:G, 5mld:H
47 3sub:A 139 36 0.0459 0.0935 0.3611 4.3 3sub:B
48 4rh7:A 3005 36 0.0601 0.0057 0.4722 4.5
49 6sc2:B 3930 36 0.0601 0.0043 0.4722 4.5 6rla:A, 6rla:B, 6sc2:A
50 2hc9:A 489 21 0.0389 0.0225 0.5238 5.1
51 2www:D 314 43 0.0459 0.0414 0.3023 5.1 2www:A, 2www:B, 2www:C
52 3add:A 251 31 0.0424 0.0478 0.3871 5.2 3a4l:A, 3a4l:B, 3a4m:A, 3a4m:B, 3adb:A, 3adb:B, 3adc:A, 3adc:B, 3add:B, 3am1:A
53 3p32:A 306 50 0.0601 0.0556 0.3400 5.3 4gt1:A, 3md0:A
54 3dtt:B 222 43 0.0530 0.0676 0.3488 5.6 3dtt:A
55 8ucf:A 381 187 0.1378 0.1024 0.2086 5.7 8uce:A, 8uce:B, 8ucg:A, 8ucg:B, 8uch:A, 8uci:A, 8uci:B
56 5hmn:B 159 96 0.1060 0.1887 0.3125 6.4 5hmn:A, 5hmn:C, 5hmn:E, 5hmn:F
57 3la6:B 260 49 0.0459 0.0500 0.2653 6.7 3la6:A, 3la6:C, 3la6:D, 3la6:E, 3la6:F, 3la6:G, 3la6:H, 3la6:I, 3la6:J, 3la6:K, 3la6:L, 3la6:M, 3la6:N, 3la6:O, 3la6:P
58 6u1q:A 208 28 0.0424 0.0577 0.4286 7.3 6u1q:B
59 8jxu:A 1410 39 0.0459 0.0092 0.3333 7.8 8jxq:A
60 2xj9:A 265 27 0.0495 0.0528 0.5185 8.4 2xj9:B
61 8zkc:A 346 31 0.0636 0.0520 0.5806 9.1
62 7npf:C 404 46 0.0601 0.0421 0.3696 10.0 7npe:A, 7npe:B, 7npe:C, 7npe:D, 7npf:B, 7npf:D, 7npf:F, 7npf:H, 7npf:E, 7npf:G, 7npf:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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