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BioLiP
>protein
AMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLDSRELLREAWRRIQAKGYT
LGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMK

The query sequence (length=146) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3esj:A 162 156 0.9795 0.8827 0.9167 2.46e-99 2amt:A, 2amt:B, 2amt:C, 2amt:D, 2amt:F, 2amt:E, 3elc:A, 3elc:B, 3elc:C, 3eor:A, 3ern:A, 3ern:B, 3ern:C, 3ern:D, 3ern:E, 3ern:F, 3fba:A, 3ghz:A, 3ghz:B, 3ghz:C, 1gx1:A, 1gx1:C, 1gx1:B, 2gzl:A, 1h47:A, 1h47:B, 1h47:C, 1h47:D, 1h47:E, 1h47:F, 1h48:A, 1h48:F, 1h48:C, 1h48:B, 1h48:D, 1h48:E, 1jy8:A, 1knj:A, 1knk:A, 3t80:A, 3t80:B, 3t80:C, 3t80:D, 3t80:E, 3t80:F, 1u3l:A, 1u3p:A, 1u40:A, 1u43:A, 1yqn:A
2 3fpi:A 161 159 0.8630 0.7826 0.7925 1.01e-84
3 1jn1:A 157 156 0.7671 0.7134 0.7179 3.44e-76 1jn1:B, 1jn1:C, 1vh8:A, 1vh8:B, 1vh8:C, 1vh8:D, 1vh8:E, 1vh8:F, 1vha:A, 1vha:B, 1vha:C, 1vha:D, 1vha:E, 1vha:F
4 5b8f:C 164 155 0.6986 0.6220 0.6581 1.66e-62 5b8f:A, 5b8f:B
5 1t0a:A 158 156 0.6644 0.6139 0.6218 6.35e-62 1t0a:B, 1t0a:C
6 4c8e:A 161 156 0.6301 0.5714 0.5897 8.78e-57 4c8e:C, 4c8e:B, 4c8g:A, 4c8g:C, 4c8g:B, 4c8i:A, 4c8i:B, 4c8i:C, 3f0d:B, 3k2x:A, 3mbm:B
7 3iew:A 160 156 0.6164 0.5625 0.5769 2.39e-55 3f0d:A, 3f0d:C, 3f0d:D, 3f0d:E, 3f0d:F, 3f0e:A, 3f0e:B, 3f0e:C, 3f0f:A, 3f0f:B, 3f0f:C, 3f0g:A, 3f0g:B, 3f0g:C, 3f0g:D, 3f0g:E, 3f0g:F, 3ieq:A, 3ieq:C, 3ieq:B, 3iew:C, 3iew:B, 3ike:A, 3ike:B, 3ike:C, 3ikf:A, 3ikf:B, 3ikf:C, 3jvh:A, 3jvh:B, 3jvh:C, 3k14:A, 3k14:B, 3k14:C, 3k2x:C, 3k2x:B, 3ke1:A, 3ke1:B, 3ke1:C, 5l03:A, 5l03:B, 5l03:C, 5l12:A, 5l12:B, 5l12:C, 3mbm:A, 3mbm:C, 6mwf:A, 6mwf:B, 6mwf:C, 6mwi:A, 6mwi:B, 6mwi:C, 6mwj:A, 6mwj:B, 6mwj:C, 6mwk:A, 6mwk:B, 6mwk:C, 6nmo:A, 6nmo:B, 6nmo:C, 3p0z:A, 3p0z:C, 3p0z:B, 3p10:A, 3p10:C, 3p10:B, 3q8h:A, 3q8h:B, 3q8h:C, 3qhd:A, 3qhd:C, 3qhd:B, 6v3m:A, 6v3m:B, 6v3m:C
8 5iwx:A 158 156 0.6164 0.5696 0.5769 1.10e-54 5iwx:B, 5iwx:C, 5iwx:D, 5iwx:E, 5iwx:F, 5iwy:A, 5iwy:C, 5iwy:B, 5iwy:D, 5iwy:E, 5iwy:F
9 5esv:G 187 184 0.6781 0.5294 0.5380 2.51e-51 5esv:E, 5esv:F
10 3re3:B 144 150 0.5411 0.5486 0.5267 4.78e-47
11 1w55:A 369 145 0.4795 0.1897 0.4828 3.91e-38 1w57:A
12 2pmp:A 160 156 0.4658 0.4250 0.4359 5.05e-36
13 8xkf:C 377 148 0.4110 0.1592 0.4054 5.89e-29 8xhu:A, 8xhu:B, 8xhu:C, 8xkf:A, 8xkf:B, 8xkf:D, 8xkf:F, 8xkf:E
14 4c81:A 156 150 0.3904 0.3654 0.3800 1.07e-24 4c82:A
15 3b6n:A 150 153 0.3904 0.3800 0.3725 9.63e-24
16 2uzh:C 155 147 0.3767 0.3548 0.3741 2.38e-21 2uzh:A, 2uzh:B
17 1iv2:A 150 136 0.3493 0.3400 0.3750 1.55e-19 1iv2:C, 1iv2:B, 1iv2:D, 1iv2:F, 1iv2:E, 1iv3:A, 1iv3:B, 1iv3:C, 1iv3:D, 1iv3:E, 1iv3:F, 1iv4:A, 1iv4:B, 1iv4:C, 1iv4:D, 1iv4:E, 1iv4:F
18 7aj0:A 501 48 0.1233 0.0359 0.3750 0.37 7aj0:B, 7aj0:C, 7aj0:D, 7aj0:E, 7aj0:F
19 8ee6:A 1808 34 0.1027 0.0083 0.4412 2.4 8edw:A
20 3pw3:D 353 32 0.0959 0.0397 0.4375 3.3 6w4n:A, 6w4n:B, 6w4n:C, 6w4n:D, 5wdk:B, 5wdk:C, 5wdk:E
21 8vl7:C 224 78 0.1438 0.0938 0.2692 3.7 9ava:A, 9ava:B, 9ava:C, 9ava:D, 9ava:E, 9ava:F, 9ava:G, 9ava:H, 9ava:I, 9ava:J, 9ava:K, 9ava:L, 7tqq:A, 7tqq:B, 7tqq:E, 7tqq:F, 8vl7:A, 8vl7:B, 8vl7:D, 8vl7:E, 8vl7:F, 8vl7:G, 8vl7:H
22 3pw3:A 374 32 0.0959 0.0374 0.4375 3.7 3pw3:B, 3pw3:C, 3pw3:E, 3pw3:F, 6w4n:E, 6w4n:F, 5wdk:A, 5wdk:D, 5wdk:F, 5wdl:A, 5wdl:B, 5wdl:C, 5wdl:D, 5wdl:E, 5wdl:F
23 3v4l:A 386 44 0.0959 0.0363 0.3182 5.2 7a41:B, 6f7i:B, 6h4a:A, 4i1p:A, 4i1p:C, 7pav:B, 7paw:B, 3uo8:B, 3uo8:C, 3uoa:B, 3uoa:C, 3v4o:A, 8v4x:A, 8v4x:B, 8v4x:C, 8v4x:D, 8v4x:E, 8v4x:F, 6yn8:A, 6yn9:A
24 1yht:A 344 52 0.1027 0.0436 0.2885 5.9
25 3o32:A 256 49 0.1027 0.0586 0.3061 6.8 3o32:B, 3o5u:A, 3o5u:B, 3o6j:A, 3o6j:B, 3o6r:A, 3o6r:B, 1s9a:A, 1s9a:B
26 6d5f:A 194 81 0.1644 0.1237 0.2963 7.5 6d5f:B, 6d5f:C, 6d5f:D, 6d5f:E, 6d5f:F, 6d5f:G, 6d5f:H, 6d5f:I, 6d5f:J, 6d5f:K, 6d5f:L, 6d5f:M, 6d5f:N, 6d5f:O, 6d5f:P, 6d5f:Q, 6d5f:R, 6d5f:S, 6d5f:T, 6d5f:U, 6d5f:V, 6d5f:W, 6d5f:X, 6d5f:Y, 6d5f:Z
27 6kwy:c 1811 32 0.0753 0.0061 0.3438 7.5 8cvs:c, 6kwx:A, 7naq:c
28 8sw0:A 864 29 0.0890 0.0150 0.4483 8.3 8sw1:A
29 1f12:A 293 61 0.1027 0.0512 0.2459 8.8 1f0y:A, 1f0y:B, 1f17:A, 1f17:B, 3had:A, 3had:B, 2hdh:A, 2hdh:B, 3hdh:A, 3hdh:B, 3hdh:C, 1il0:A, 1il0:B, 1lsj:A, 1lsj:B, 1lso:A, 1lso:B, 1m75:A, 1m75:B, 1m76:A, 1m76:B
30 5c16:A 487 21 0.0685 0.0205 0.4762 9.3 5c16:B, 5c16:C, 5c16:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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