Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AMNSTIQTILGHRSIRKFTSQPIDKEQLETILQAGLAASSSSMLQVVSIVRVTDIEKRSQLAKFAGNQAYVESAAEFLVF
CIDYQRHASINPDVQADFTELMLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLRNNAQQVDELLGLPQNTAILFGMCLGH
PDQNPEVKPRLPAHVVVHENQYQDLNLDDIQAYDQTMQNYYANQSTWSQEVTSKLAGESRPHILPYLNGKGLAKK

The query sequence (length=235) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5uu6:C 236 236 1.0000 0.9958 0.9958 1.38e-176 5uu6:A, 5uu6:B, 5uu6:D
2 1bkj:A 230 233 0.8638 0.8826 0.8712 7.78e-154 1bkj:B, 2bkj:A, 2bkj:B
3 8ajx:A 240 240 0.5106 0.5000 0.5000 4.85e-78 1f5v:A, 1f5v:B, 7nb9:A, 7niy:A, 7nmp:A, 7nnx:A, 7q0o:A, 7z0w:A, 7z0w:B, 7z0w:C, 7z0w:D, 7z0w:E, 7z0w:F, 7z0w:G, 7z0w:H
4 5hdj:B 248 248 0.4255 0.4032 0.4032 1.17e-62 5hdj:A
5 3n2s:A 248 248 0.4213 0.3992 0.3992 3.97e-60 3n2s:B, 3n2s:C, 3n2s:D
6 1zch:A 249 246 0.4000 0.3775 0.3821 3.33e-49
7 5hei:A 246 242 0.4000 0.3821 0.3884 2.05e-46 5hei:B, 5hei:C, 5hei:D, 5hei:E, 5hei:F, 5hei:G, 5hei:H
8 3eof:A 248 199 0.2553 0.2419 0.3015 1.46e-23 3eof:B
9 4dn2:A 191 191 0.2553 0.3141 0.3141 1.69e-19 4dn2:B
10 3m5k:A 168 164 0.2043 0.2857 0.2927 2.10e-15 3m5k:B
11 3kwk:A 168 182 0.2000 0.2798 0.2582 3.16e-13
12 4g8s:A 182 182 0.2043 0.2637 0.2637 7.59e-12 4g8s:B
13 3gfa:A 197 188 0.2043 0.2437 0.2553 1.11e-10 3gfa:B
14 3ge5:A 176 158 0.1830 0.2443 0.2722 1.52e-10 3ge5:B
15 8cqt:B 164 178 0.2085 0.2988 0.2753 3.57e-10 8cqt:A
16 5j62:B 209 206 0.2383 0.2679 0.2718 2.04e-09 5j62:A
17 1nox:A 200 188 0.2340 0.2750 0.2926 6.00e-08
18 3gr3:A 226 200 0.2170 0.2257 0.2550 1.32e-07 3gr3:B
19 3e39:A 175 180 0.2043 0.2743 0.2667 3.64e-07 3e39:B
20 5j6c:A 173 165 0.1830 0.2486 0.2606 6.79e-07 5j6c:B
21 3ek3:A 187 179 0.1660 0.2086 0.2179 1.16e-05
22 8uc3:A 180 158 0.1915 0.2500 0.2848 3.66e-05 8uc3:B
23 2fre:A 200 154 0.1745 0.2050 0.2662 5.21e-05 2fre:B
24 2isj:A 219 206 0.2128 0.2283 0.2427 7.07e-05 2isj:B, 2isj:C, 2isj:D, 2isj:E, 2isj:F, 2isj:G, 2isj:H, 2isk:A, 2isk:B, 2isk:C, 2isk:D, 2isk:E, 2isk:F, 2isk:G, 2isk:H, 2isl:A, 2isl:B, 2isl:C, 2isl:D, 2isl:E, 2isl:F, 2isl:G, 2isl:H
25 3e10:B 167 159 0.1489 0.2096 0.2201 7.13e-04 3e10:A
26 3eo7:A 487 55 0.0894 0.0431 0.3818 0.001
27 3pxv:B 189 74 0.1064 0.1323 0.3378 0.011 3pxv:A, 3pxv:C, 3pxv:D
28 2i7h:A 187 184 0.1745 0.2193 0.2228 0.011 2i7h:B, 2i7h:C, 2i7h:D
29 2r01:A 195 60 0.0809 0.0974 0.3167 0.016
30 3gbh:B 213 200 0.1617 0.1784 0.1900 0.042 3gbh:A, 3gbh:C, 3gbh:D
31 4xoq:A 204 191 0.2000 0.2304 0.2461 0.049 4xoo:A, 4xoo:B, 4xoo:C, 4xoo:D, 4xoq:B, 4xoq:C, 4xoq:D
32 8cqs:B 194 96 0.1191 0.1443 0.2917 0.11 8cqs:A
33 3hoi:A 193 64 0.0936 0.1140 0.3438 0.18
34 3hj9:A 215 177 0.1830 0.2000 0.2429 0.33 3hj9:B
35 5ko7:B 200 154 0.1617 0.1900 0.2468 0.51
36 3qdl:A 178 115 0.1362 0.1798 0.2783 0.68 3qdl:B, 3qdl:C, 3qdl:D
37 7dp0:A 223 50 0.0681 0.0717 0.3200 0.69 7dp0:B, 7dp1:A, 7dp1:B, 7dp2:A, 7dp2:B
38 6sdk:A 199 49 0.0766 0.0905 0.3673 0.81 6sdk:B, 6sdk:C, 6sdk:D
39 3bm1:A 177 174 0.1660 0.2203 0.2241 1.8 3bm1:B
40 7tmf:B 183 63 0.0894 0.1148 0.3333 2.1 7tmf:A, 7tmg:A, 7tmg:B
41 5ko8:B 218 58 0.0596 0.0642 0.2414 2.3 5ko7:A, 5ko8:A, 5krd:A, 5krd:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218