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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AMNLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNDDYQQAALRQSIRILKMLFEHGIETVISPIFSDD
LLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFG
NDAAESVAQFSISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTLRR
ILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG

The query sequence (length=294) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3wqm:A 294 294 1.0000 1.0000 1.0000 0.0 4cmx:A, 4cmx:B, 4kt8:A, 3wqk:A, 3wql:A, 3wql:B, 3wql:C, 3wql:D, 3wqn:A
2 3egd:B 731 46 0.0578 0.0233 0.3696 0.19 3egx:B, 8hr0:B, 2nup:B, 2nut:B, 5vne:B, 5vnf:B, 5vng:B, 5vnh:B, 5vni:B, 5vnj:B, 5vnk:B, 5vnl:B, 5vnm:B, 5vnn:B, 5vno:B
3 7r81:U2 143 94 0.0850 0.1748 0.2660 0.25
4 5izo:B 320 73 0.0884 0.0813 0.3562 0.62 5ipp:A, 5ipp:C, 5iuf:A, 5iuf:B, 5izo:A, 5izo:C, 5izo:D
5 1syo:A 422 56 0.0578 0.0403 0.3036 0.82 1syo:B, 1sz0:A, 1sz0:B
6 3i5t:A 444 64 0.0646 0.0428 0.2969 0.92 3i5t:B
7 3p4h:A 118 46 0.0544 0.1356 0.3478 1.3 3ta5:A, 3ta7:A
8 5kr6:B 460 116 0.1020 0.0652 0.2586 1.4 5kr6:A
9 4rh7:A 3005 43 0.0544 0.0053 0.3721 1.9
10 6sc2:B 3930 43 0.0544 0.0041 0.3721 2.0 6rla:A, 6rla:B, 6sc2:A
11 3gju:A 458 98 0.0850 0.0546 0.2551 2.1
12 3eh1:A 737 46 0.0510 0.0204 0.3261 2.2
13 7olc:ST 142 67 0.0612 0.1268 0.2687 3.3 7old:ST, 8oo0:ST, 6rxx:Cr, 7z3n:ST, 7z3o:ST
14 5kqu:C 459 115 0.0952 0.0610 0.2435 5.0 5kqt:A, 5kqu:A, 5kqu:D, 5kqu:B, 5kqu:E, 5kqu:F
15 3nzq:A 628 50 0.0578 0.0271 0.3400 8.7 3nzq:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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