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BioLiP
>protein
AMNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHAANVPAFVSGKALKDAVK

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4yew:C 71 72 0.9589 0.9859 0.9722 4.35e-43 6o6k:B, 6oaj:D, 4yex:C, 4yft:C
2 6oaj:B 79 79 0.9726 0.8987 0.8987 8.03e-43 6o6k:A, 6o8q:A, 6o8q:I, 6oaj:C, 4yey:C, 4yf0:A, 4yfh:A
3 6o8q:B 91 90 0.9863 0.7912 0.8000 1.35e-41 6o8q:G, 6o8q:H, 6o8q:F, 4yf0:B, 4yfh:B
4 4qju:A 90 90 0.5342 0.4333 0.4333 4.49e-18 4qju:B
5 1p71:A 94 89 0.4932 0.3830 0.4045 8.04e-14 1p51:A, 1p51:B, 1p51:D, 1p51:C, 1p71:B, 1p78:A, 1p78:B
6 4dky:B 101 51 0.2877 0.2079 0.4118 5.16e-09
7 8flj:F 94 91 0.3288 0.2553 0.2637 1.25e-07 8flj:H
8 2iie:A 204 61 0.2466 0.0882 0.2951 8.63e-04 2ht0:A, 1ihf:A, 2iif:A, 5j0n:I, 5j0n:K, 1ouz:A, 1owf:A, 1owg:A, 5wfe:K
9 8flj:G 98 61 0.2329 0.1735 0.2787 0.001 8flj:E
10 6nvo:A 200 46 0.2055 0.0750 0.3261 2.8 6nvp:A
11 5m7i:A 425 54 0.2055 0.0353 0.2778 3.7 5m7y:A, 3qt9:A, 6rqk:A, 6rqk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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