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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLGGISVEKPFE
QILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPDVPARPDGLAGVSKCFGENLARMYFDKFGQETALV
RIGSCTPEPNNYRMLSTWFSHDDFVSLIEAVFRAPVLGCPVVWGASANDAGWWDNSHLGFLGWKPKDNAEAFRRHITETT
PPPDPNDALVRFQGGTFVDNPIFKQ

The query sequence (length=265) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3rfv:A 265 265 0.9962 0.9962 0.9962 0.0 3rfv:B, 3rfv:C, 3rfx:A, 3rfx:B, 3rfx:C
2 4id9:B 328 249 0.2717 0.2195 0.2892 2.60e-13 4id9:A, 4idg:A, 4idg:B
3 3ehe:A 290 170 0.1887 0.1724 0.2941 6.36e-10 3ehe:B
4 3a1n:A 315 185 0.2038 0.1714 0.2919 7.33e-10 3a1n:B, 3a4v:A, 3a4v:B, 3a9w:A, 3a9w:B, 3ajr:A, 3ajr:B
5 7cgv:A 310 170 0.2000 0.1710 0.3118 2.16e-09 7cgv:B, 7cgv:C, 7cgv:D
6 6jyg:D 307 168 0.2000 0.1726 0.3155 4.44e-08 6jyg:A, 6jyg:B, 6jyg:C, 6jyg:E, 6jyg:F
7 6wj9:B 308 172 0.2113 0.1818 0.3256 2.82e-07 6wj9:A, 6wja:A, 6wja:B, 6wjb:A, 6wjb:B
8 2hun:A 329 148 0.1698 0.1368 0.3041 6.65e-07 2hun:B
9 1r66:A 322 189 0.2113 0.1739 0.2963 7.98e-07 1r6d:A
10 3aw9:A 304 168 0.1774 0.1546 0.2798 9.35e-07 3aw9:B, 3aw9:C, 3icp:A, 3ko8:A
11 2c59:A 364 189 0.1660 0.1209 0.2328 2.03e-06 2c54:A, 2c54:B, 2c59:B, 2c5a:A, 2c5a:B, 2c5e:A, 2c5e:B, 8sg0:A, 8sg0:B, 8skb:A, 8skb:B, 8skb:C, 8skb:D
12 5u4q:B 304 220 0.2189 0.1908 0.2636 4.82e-06
13 4r1s:A 319 116 0.1283 0.1066 0.2931 1.54e-05 4r1s:B
14 5z75:A 306 168 0.1698 0.1471 0.2679 2.41e-05 5z75:B, 5z75:D
15 1ker:B 347 149 0.1623 0.1239 0.2886 8.34e-05 1kep:A, 1kep:B, 1ker:A, 1ket:A, 1ket:B, 1oc2:A, 1oc2:B
16 6bwl:A 313 173 0.1547 0.1310 0.2370 3.87e-04
17 3c1t:B 326 122 0.1170 0.0951 0.2541 8.11e-04 3bxx:A, 3bxx:B, 3bxx:C, 3bxx:D, 3bxx:E, 3bxx:F, 3c1t:A, 3c1t:C, 3c1t:D, 2c29:D, 2c29:F, 2iod:A, 2iod:B, 2iod:C, 2iod:D, 2nnl:D, 2nnl:F
18 2pk3:A 309 167 0.1585 0.1359 0.2515 8.42e-04 2pk3:B
19 5u4q:A 321 175 0.1736 0.1433 0.2629 0.001
20 7us5:A 346 224 0.2113 0.1618 0.2500 0.001 7us5:B, 7us5:C, 7us5:D
21 5y1f:A 311 171 0.1585 0.1350 0.2456 0.002 5y1e:A, 5y1g:A
22 7xpo:A 344 168 0.1660 0.1279 0.2619 0.002 7xpo:B, 7xpp:B, 7xpp:A, 7xpq:A, 7xpq:B
23 8wov:B 341 167 0.1660 0.1290 0.2635 0.002 8wop:A, 8wop:B, 8wov:A, 8wow:A, 8wow:B
24 1bxk:B 344 197 0.1698 0.1308 0.2284 0.004 1bxk:A
25 6bwc:C 327 128 0.1170 0.0948 0.2422 0.015 6bwc:A, 6bwc:B, 6bwc:D, 6bwc:E, 6bwc:F
26 6dnt:A 310 175 0.1623 0.1387 0.2457 0.020
27 2dte:A 255 59 0.0717 0.0745 0.3220 0.022 2dte:B, 2dtx:A, 2dtx:B
28 1vl0:A 281 196 0.1736 0.1637 0.2347 0.024 1vl0:B, 1vl0:C
29 6zll:A 321 178 0.1434 0.1184 0.2135 0.028 6zl6:A, 6zl6:B, 6zla:A, 6zla:B, 6zla:C, 6zla:D, 6zld:A, 6zld:B, 6zlj:A, 6zlj:B, 6zlk:A, 6zlk:B, 6zlk:C, 6zlk:D, 6zll:B, 6zll:C, 6zll:D
30 3wye:A 255 107 0.1094 0.1137 0.2710 0.046 3wye:B
31 1geg:E 256 109 0.1170 0.1211 0.2844 0.055 1geg:A, 1geg:B, 1geg:C, 1geg:D, 1geg:F, 1geg:G, 1geg:H
32 2b69:A 312 171 0.1547 0.1314 0.2398 0.059 4gll:A, 4gll:B
33 3sc6:D 283 164 0.1698 0.1590 0.2744 0.062 3sc6:A, 3sc6:B, 3sc6:C, 3sc6:E, 3sc6:F
34 1i3k:A 347 122 0.1321 0.1009 0.2869 0.063 1ek5:A, 1ek6:A, 1ek6:B, 1hzj:A, 1hzj:B, 1i3k:B, 1i3l:A, 1i3l:B, 1i3m:A, 1i3m:B, 1i3n:A, 1i3n:B
35 3lu1:A 336 178 0.1547 0.1220 0.2303 0.073 3lu1:B, 3lu1:C, 3lu1:D, 3ru7:A, 3ru7:B, 3ru7:C, 3ru7:D, 3ru9:A, 3ru9:B, 3ru9:C, 3ru9:D, 3rua:A, 3rua:B, 3rua:C, 3rua:D, 3ruc:A, 3ruc:B, 3ruc:C, 3ruc:D, 3rud:A, 3rud:B, 3rud:C, 3rud:D, 3rue:A, 3rue:B, 3rue:S, 3rue:b, 3ruf:A, 3ruf:B, 3ruf:S, 3ruf:b, 3ruh:A, 3ruh:B, 3ruh:C, 3ruh:D
36 3st7:A 369 158 0.1358 0.0976 0.2278 0.080 2zkl:A
37 3ndr:A 247 199 0.1623 0.1741 0.2161 0.11 3ndr:B, 3ndr:C, 3ndr:D, 3nug:A, 3nug:B, 3nug:C, 3nug:D, 3rwb:A, 3rwb:B, 3rwb:C, 3rwb:D
38 6nbr:A 316 94 0.0717 0.0601 0.2021 0.14 6nbr:B, 6nbr:C, 6nbr:D
39 2ewm:B 247 94 0.1019 0.1093 0.2872 0.16 2ewm:A
40 2q1w:A 300 175 0.1509 0.1333 0.2286 0.16 2q1w:B, 2q1w:C
41 6uh2:B 255 87 0.0906 0.0941 0.2759 0.18 6uh2:A
42 1gy8:C 370 104 0.1057 0.0757 0.2692 0.26 2cnb:A, 2cnb:B, 2cnb:C, 2cnb:D, 1gy8:A, 1gy8:B, 1gy8:D
43 9cly:B 242 118 0.1208 0.1322 0.2712 0.26 9cly:A
44 3wmw:B 278 76 0.0830 0.0791 0.2895 0.31 3wmw:A
45 3m2p:B 255 94 0.1094 0.1137 0.3085 0.33
46 6pej:A 257 126 0.1170 0.1206 0.2460 0.35 6pej:B, 6pej:C, 6pej:D
47 3vvb:A 270 224 0.1811 0.1778 0.2143 0.39
48 8cxa:A 251 96 0.1019 0.1076 0.2812 0.44 8cxa:B
49 6kv9:A 299 146 0.1623 0.1438 0.2945 0.58 6kvc:A
50 7epr:B 310 76 0.0830 0.0710 0.2895 0.59 7epr:A, 7epr:C, 7epr:D
51 7eps:A 310 76 0.0792 0.0677 0.2763 0.75 7eps:B, 7eps:C, 7eps:D, 3wmx:A, 3wmx:B, 3wmx:C, 3wmx:D
52 2ak5:B 64 19 0.0302 0.1250 0.4211 1.1 2df6:A, 2df6:B
53 8jlf:B 420 153 0.1170 0.0738 0.2026 1.1 8js9:B, 6thy:AAA, 7z5s:BBB
54 5k4w:C 321 173 0.1736 0.1433 0.2659 1.1 5k4q:A, 5k4q:B, 5k4q:C, 5k4q:D, 5k4q:E, 5k4q:F, 5k4u:A, 5k4u:C, 5k4v:A, 5k4v:C, 5k4w:A, 5k4y:A, 5k4y:B, 5k4y:C, 5k4y:D, 5k4y:E, 5k4y:F, 5k50:A, 5k50:C, 5k50:E, 5k50:G, 5k50:I, 5k50:J, 5lc1:A, 5lc1:B, 5lc1:C, 5lc1:D, 5lc1:E, 5lc1:F
55 4j2o:C 316 129 0.1283 0.1076 0.2636 1.2 4j2o:A, 4j2o:B, 4j2o:D, 4j2o:E, 4j2o:F
56 8opr:A 651 136 0.1434 0.0584 0.2794 1.4
57 1rpn:D 322 68 0.0792 0.0652 0.3088 1.5 1rpn:A, 1rpn:B, 1rpn:C
58 2q46:A 253 70 0.0679 0.0711 0.2571 1.5 2q46:B, 2q4b:A, 2q4b:B, 1xq6:A, 1xq6:B, 1ybm:A, 1ybm:B
59 5d2e:A 485 132 0.1170 0.0639 0.2348 1.6
60 5ts3:A 265 86 0.0868 0.0868 0.2674 1.6 5ts3:B
61 4yrb:C 249 76 0.0868 0.0924 0.3026 1.7 4yrb:A, 4yrb:D, 4yrb:E
62 3osu:A 246 173 0.1434 0.1545 0.2197 1.7 3sj7:A, 3sj7:B
63 7yst:A 312 176 0.2075 0.1763 0.3125 1.8 7ys8:A, 7ys8:B, 7ys9:A, 7ys9:B, 7ysa:A, 7ysa:B, 7ysm:A, 7ysm:B, 7yst:B, 7ysy:A, 7ysy:B, 7yt0:A, 7yt0:B
64 2o2s:A 303 54 0.0717 0.0627 0.3519 2.4 3nj8:A, 3nj8:B, 4o1m:A, 4o1m:B, 4o1m:C, 4o1m:D, 4o1m:E, 4o1m:F, 2o2s:B
65 6zzo:C 265 96 0.0981 0.0981 0.2708 2.6 6zzo:A, 6zzo:B, 6zzo:D, 6zzp:A, 6zzp:B, 6zzp:C, 6zzp:D
66 4yr9:A 308 79 0.0981 0.0844 0.3291 3.0 4yr9:B, 4yr9:C, 4yr9:D, 4yr9:E, 4yr9:F
67 5nue:B 332 121 0.1434 0.1145 0.3140 3.7 5nue:A, 5nue:C, 5nuf:A, 5nuf:B, 5nuf:C
68 3ven:A 571 75 0.0830 0.0385 0.2933 4.3 3veo:A, 3ver:A, 3ves:A, 3vet:A, 3vew:A, 3vex:A, 3vez:A, 3vf2:A, 3vf4:A
69 5aws:A 275 58 0.0679 0.0655 0.3103 4.3 5awr:A, 5aws:B, 5awt:A, 5awu:A
70 8fd8:A 223 160 0.1434 0.1704 0.2375 5.2 8fd8:B
71 1ece:A 358 53 0.0528 0.0391 0.2642 5.4 1ece:B
72 2gdz:A 266 111 0.1170 0.1165 0.2793 5.5 8cvn:A, 8cvn:B, 8cwl:A, 8cwl:B
73 4e6r:A 58 17 0.0302 0.1379 0.4706 5.9
74 4zrn:A 309 170 0.1509 0.1294 0.2353 5.9 4zrm:A, 4zrm:B, 4zrn:B
75 5xd8:B 367 157 0.1358 0.0981 0.2293 6.4 5xd7:A, 5xd8:A, 5xd9:A
76 2ggs:A 273 34 0.0453 0.0440 0.3529 7.4 2ggs:B
77 4c6v:A 415 42 0.0679 0.0434 0.4286 7.9 4c6u:A, 4c6w:A, 4c6w:B, 4c6x:A, 4c6x:B, 4c6z:A, 4c6z:B, 4c70:A, 4c70:B, 4c71:A, 4c71:B, 4c72:A, 4c72:B, 4c73:A, 4c73:B, 5ld8:A, 5ld8:B, 6p9k:A, 6p9l:A, 6p9m:A, 5w2o:A, 5w2p:A, 5w2q:A, 5w2s:A, 2wge:A, 2wgg:A, 2wgg:B, 2wgg:C, 2wgg:D, 2wgg:E, 2wgg:F, 2wgg:G, 2wgg:H, 6y2i:AAA, 6y2i:BBB, 6y2j:AAA, 6y2j:BBB, 6y2j:CCC, 6y2j:DDD, 6y2j:EEE, 6y2j:FFF, 6y2j:GGG, 6y2j:HHH
78 6bxk:A 340 32 0.0491 0.0382 0.4062 7.9 6bxk:B, 6bxl:A, 6bxl:B, 3lzd:A, 3lzd:B
79 1iy8:A 258 138 0.1321 0.1357 0.2536 9.0 1iy8:B, 1iy8:C, 1iy8:D, 1iy8:E, 1iy8:F, 1iy8:G, 1iy8:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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