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BioLiP
>protein
AMKKDSKAPCVEVFDERDGCKAAGTQKASGDDGFCVKVSMKAIGFNAAEAASVTKNYGIKRFGA

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4lmx:C 66 64 1.0000 0.9697 1.0000 2.56e-41 8el3:A, 8el3:J, 8el3:G, 8el3:K, 8el4:A, 8el4:F, 8el5:A, 8el5:J, 8el5:K, 8el5:G, 8el6:A, 8el6:F
2 4lmx:E 66 64 0.8906 0.8636 0.8906 5.95e-36 8el3:C, 8el3:I, 8el3:E, 8el3:L, 8el4:C, 8el4:E, 8el5:C, 8el5:I, 8el5:E, 8el5:L, 8el6:C, 8el6:E, 4lmx:A, 4lmx:G, 4lmx:I, 4lmx:K
3 4lm6:A 62 58 0.5312 0.5484 0.5862 8.02e-18 4lm6:C
4 7s96:A 63 60 0.5781 0.5873 0.6167 1.70e-17 7s96:C, 7s97:C, 7t89:A, 7t89:C
5 7ssf:A 72 49 0.4219 0.3750 0.5510 3.49e-10 7ssf:C, 7ssf:E, 7ssf:G
6 7t7u:A 81 56 0.3594 0.2840 0.4107 2.35e-05
7 7t7u:C 70 59 0.3750 0.3429 0.4068 2.89e-05
8 7t8s:D 70 60 0.3906 0.3571 0.4167 1.83e-04 7t8s:H, 7t8s:L, 7t8s:P
9 4lms:A 80 50 0.3438 0.2750 0.4400 2.26e-04
10 7t8s:B 78 57 0.3594 0.2949 0.4035 0.001 7t8s:F, 7t8s:J, 7t8s:N
11 7tja:G 67 61 0.3906 0.3731 0.4098 0.002 7tja:Q, 7tja:C, 7tja:K, 7tja:O, 7tlf:C, 7tlf:G, 7tlf:K, 7tlf:O
12 1qgw:A 76 62 0.3125 0.2632 0.3226 0.008 1xf6:A, 1xg0:A
13 7tja:I 75 42 0.2656 0.2267 0.4048 0.053 7tja:A, 7tja:R, 7tja:E, 7tja:M, 7tlf:A, 7tlf:E, 7tlf:I, 7tlf:M
14 7sut:A 78 65 0.3906 0.3205 0.3846 0.059 7sut:E
15 1qgw:B 67 42 0.2969 0.2836 0.4524 0.21 1xf6:B, 1xg0:B
16 6kz8:A 784 39 0.2031 0.0166 0.3333 8.3 6kz8:B, 6kz9:A
17 2lua:A 52 29 0.1094 0.1346 0.2414 8.3 4rkg:B, 4rkh:D, 4rkh:E, 4rkh:C, 4rkh:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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