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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AMKILFSPIGNTDPWRNDRDGAMLHIVRHYQPDRVVLFFTESIWQGNQHFSGQQAFDWVKIIQSINENCQIEIKCDTIEV
ENDFDAYKDLFHQYLVEEKRKYPNAEIFLNVTSGTPQMETTLCLEYVTYPDKMRCIQVSTPLKYAQADCQEVDLEIVNEE
ESQQPSRCHKIAILSFREAIVRNQIKSLLDNYDYEAALQLVASQKSFRNGKEIRKKLKELIDDIKMHRVFSYLIKQYPRN
EKLQKALLHTILLEMRHQRGDIAETLIRVKSIAEYIVEQYIQKNYPYLIIYKEDKPYFNVSYSQELTESYLALMDSTVDS
LDRILGFPAYRDFLQLLEASNEMTNEMNKVNEINNLRNKVAHNLDSLNLDRDKNGRKITNAVTAVRTMLLAVFPEVQEND
FHYLKQFNQSIKELL

The query sequence (length=415) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6tug:B 415 415 0.9976 0.9976 0.9976 0.0 6tug:A, 6tug:C, 6tug:D, 6tug:E, 6tug:F, 6tug:G, 6tug:H
2 8pe3:A 386 428 0.2723 0.2927 0.2640 3.07e-38 8pe3:B
3 4yrb:B 215 69 0.0458 0.0884 0.2754 1.7 4yrb:F
4 2bam:B 210 78 0.0410 0.0810 0.2179 2.3 2bam:A, 3bam:A, 3bam:B, 1bhm:A, 1bhm:B, 1esg:A
5 7cfd:F 182 82 0.0675 0.1538 0.3415 3.9 7cfd:B, 7cfd:A, 7cfd:C, 7cfd:E, 7cfd:G, 7cfd:H, 7cfd:D
6 8vlx:A 2431 278 0.1590 0.0271 0.2374 6.5
7 3akk:A 296 125 0.0747 0.1047 0.2480 7.0 3akk:B, 3akk:C, 3akk:D, 3akl:A, 3akl:B, 3akl:C, 3akl:D
8 4j8f:A 551 112 0.0651 0.0490 0.2411 7.0 5aqw:A, 5aqx:A, 5aqy:A, 5aqz:A, 5ar0:A, 3atu:A, 3atv:A, 3ay9:A, 5bn8:A, 5bn9:A, 5bpl:A, 5bpm:A, 3d2f:B, 3d2f:D, 2e88:A, 2e8a:A, 7f4x:A, 7f4z:A, 7f50:A, 7fgm:A, 6fhk:A, 6fhk:B, 6g3r:A, 6g3s:A, 3gdq:A, 1hjo:A, 4io8:A, 3jxu:A, 7kw7:D, 5mkr:A, 5mks:A, 7q4r:A, 1s3x:A, 1xqs:C, 1xqs:D, 6zyi:A
9 7u58:A 651 41 0.0265 0.0169 0.2683 7.2 7u58:B
10 2xz7:A 324 41 0.0313 0.0401 0.3171 8.1 2xz9:A, 2xz9:B
11 3odh:A 194 32 0.0289 0.0619 0.3750 8.5 3odh:B, 3odh:E, 3odh:F
12 5y3r:C 3636 177 0.0988 0.0113 0.2316 8.8
13 3dzd:A 368 40 0.0337 0.0380 0.3500 9.0 3dzd:B
14 7kw7:C 511 112 0.0651 0.0528 0.2411 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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