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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AMKILFSPIGNTDPWRNDRDGAMLHIVRHYQPDRVVLFFTESIWQGNFSGQQAFDWVKIIQSINENCQIEIKCDTIEVEN
DFDAYKDLFHQYLVEEKRKYPNAEIFLNVTSGTPQMETTLCLEYVTYPDKMRCIQVSTPLKYAQADCQEVDLEIVNEEES
QQPSRCHKIAILSFREAIVRNQIKSLLDNYDYEAALQLVASQKSFRNGKEIRKKLKELIDDIKMHRVFSYLIKQYPRNEK
LQKALLHTILLEMRHQRGDIAETLIRVKSIAEYIVEQYIQKNYPYLIIYKEDKPYFNVSYSQELTESYLALMDSMTVDSL
DRILGFPAYRDFLQLLEASNEMTNEMNKVNEINNLRNKVAHNLDSLNLDRDKNGRKITNAVTAVRTMLLAVFPEVQENDF
HYLKQFNQSIKELL

The query sequence (length=414) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6tug:B 415 416 0.9976 0.9952 0.9928 0.0 6tug:A, 6tug:C, 6tug:D, 6tug:E, 6tug:F, 6tug:G, 6tug:H
2 8pe3:A 386 429 0.2754 0.2953 0.2657 1.38e-38 8pe3:B
3 4j8f:A 551 112 0.0676 0.0508 0.2500 0.22 5aqw:A, 5aqx:A, 5aqy:A, 5aqz:A, 5ar0:A, 3atu:A, 3atv:A, 3ay9:A, 5bn8:A, 5bn9:A, 5bpl:A, 5bpm:A, 3d2f:B, 3d2f:D, 2e88:A, 2e8a:A, 7f4x:A, 7f4z:A, 7f50:A, 7fgm:A, 6fhk:A, 6fhk:B, 6g3r:A, 6g3s:A, 3gdq:A, 1hjo:A, 4io8:A, 3jxu:A, 7kw7:D, 5mkr:A, 5mks:A, 7q4r:A, 1s3x:A, 1xqs:C, 1xqs:D, 6zyi:A
4 7kw7:C 511 112 0.0676 0.0548 0.2500 0.25
5 4yrb:B 215 69 0.0459 0.0884 0.2754 1.8 4yrb:F
6 8vlx:A 2431 279 0.1618 0.0276 0.2401 3.5
7 7cfd:F 182 82 0.0676 0.1538 0.3415 3.7 7cfd:B, 7cfd:A, 7cfd:C, 7cfd:E, 7cfd:G, 7cfd:H, 7cfd:D
8 4v5i:AS 298 69 0.0580 0.0805 0.3478 5.5 4v5i:AT, 4v5i:AU, 4v5i:AV, 4v5i:AW, 4v5i:AX, 4v5i:BS, 4v5i:BT, 4v5i:BU, 4v5i:BV, 4v5i:BW, 4v5i:BX
9 3akk:A 296 125 0.0749 0.1047 0.2480 7.0 3akk:B, 3akk:C, 3akk:D, 3akl:A, 3akl:B, 3akl:C, 3akl:D
10 7u58:A 651 41 0.0266 0.0169 0.2683 7.7 7u58:B
11 2xz7:A 324 41 0.0314 0.0401 0.3171 8.1 2xz9:A, 2xz9:B
12 3dzd:A 368 40 0.0338 0.0380 0.3500 9.5 3dzd:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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