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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AMGRLNQRNINELKIFFEKAKYYSIKLDAIYNEYTEAYNDIMTYSEVNNVTDSDKSKVNQAISILKKDNKIVNKFKELEK
IIEEYKPIFLSKLIDDFAIELDQAVDNDVSNARHVADSYKKLRKSVVLAYIESFDVISSKFVDSKFVEASKKFVNKAKEF
VEENDLIALECIVKTIGDMVNDREINSRSRYDNFYKKEADFLGAAVELEGAYKAIKQTLL

The query sequence (length=220) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7zjm:A 220 220 1.0000 1.0000 1.0000 5.22e-156 6atg:B, 6atg:C
2 2iw3:B 980 81 0.1091 0.0245 0.2963 0.25 7b7d:EF, 2iw3:A, 2iwh:A, 2iwh:B
3 4oo8:D 1163 80 0.1182 0.0224 0.3250 0.29
4 5b2r:B 1319 79 0.1182 0.0197 0.3291 0.30 5b2s:B, 5fq5:B, 5fw1:B, 8g1i:A, 6k3z:B, 6k4s:B, 6k4u:B, 6k57:B, 7qqw:B, 4un3:B, 4un4:B, 4un5:B, 8wus:A, 8wut:A, 8wuu:A
5 7z4j:B 1345 81 0.1136 0.0186 0.3086 0.30 6aeb:B, 6aeb:F, 6aeg:B, 6ai6:A, 5b2t:B, 5fw2:B, 5fw3:B, 8fzt:E, 6k4p:B, 6k4q:B, 8kah:B, 8kai:B, 8kaj:B, 8kak:B, 8kak:F, 8kal:B, 8kal:G, 8kam:B, 7ox7:B, 7ox8:B, 7ox9:B, 7oxa:B, 7qqo:B, 7qqp:B, 7qqq:B, 7qqr:B, 7qqs:B, 7qqt:B, 7qqu:B, 7qqv:B, 7qqx:B, 7qqz:B, 7qr0:B, 7qr1:B, 7qr5:B, 7qr7:B, 7qr8:B, 8wuv:A, 8ygj:A
6 7s37:P 1033 76 0.1136 0.0242 0.3289 0.31 7s3h:P
7 5xbl:A 1320 76 0.1136 0.0189 0.3289 0.32
8 8t6x:A 1278 76 0.1136 0.0196 0.3289 0.32
9 5y36:A 1368 76 0.1136 0.0183 0.3289 0.33 5f9r:B, 6ifo:A, 6ifo:B, 6mcb:A, 6mcc:A, 7s36:P, 7s38:P, 7s4x:A, 7v59:B, 7v59:E, 5vw1:A, 5vzl:A, 8ye6:A, 8ye9:A, 7z4c:B, 7z4e:B, 7z4k:B, 4zt0:A
10 8t7s:A 1312 76 0.1136 0.0191 0.3289 0.33
11 8kag:B 1346 76 0.1136 0.0186 0.3289 0.34 8kah:F, 8kai:F, 8kaj:F, 8spq:A, 8sqh:A, 8srs:A, 8tzz:A, 8u3y:A, 6vpc:B, 7z4h:B, 7z4i:B, 7z4l:B, 4zt9:A
12 8t6t:A 1168 76 0.1136 0.0214 0.3289 0.36 8t7s:G
13 6o0z:A 1288 76 0.1136 0.0194 0.3289 0.38
14 7z4d:B 1259 76 0.1136 0.0199 0.3289 0.39
15 7z4d:E 1166 76 0.1136 0.0214 0.3289 0.40
16 8t6y:A 1148 76 0.1136 0.0218 0.3289 0.40 8t6o:A, 8t79:A
17 7z4g:B 1188 76 0.1136 0.0210 0.3289 0.40 7zo1:B
18 6bq1:E 1510 56 0.0864 0.0126 0.3393 0.43 6bq1:A
19 4cmq:B 1168 76 0.1136 0.0214 0.3289 0.44 4cmp:B, 4cmq:A
20 5u6n:B 448 73 0.1045 0.0513 0.3151 0.62 5u6m:A, 5u6m:B, 5u6n:A, 5u6s:A, 5u6s:B, 5v2j:A, 5v2j:B, 5v2k:A, 5v2k:B
21 7msk:A 421 151 0.1818 0.0950 0.2649 0.72 7msk:B
22 8fae:A 468 63 0.0682 0.0321 0.2381 1.8 8fad:C, 8fad:E, 8fad:A, 8fae:C, 8fae:E
23 4m54:A 310 42 0.0682 0.0484 0.3571 2.2
24 4mp6:A 334 42 0.0682 0.0449 0.3571 2.4 4mp8:A, 4mpd:A
25 8gwa:A 667 47 0.0818 0.0270 0.3830 4.5 8gwa:a, 7uea:A, 7uea:a, 7ueb:A, 7ueb:a, 7z6q:A, 7z6q:a
26 6o0y:A 1146 95 0.1045 0.0201 0.2421 5.2
27 8t76:A 1088 53 0.0818 0.0165 0.3396 8.3
28 7s4u:A 1092 53 0.0818 0.0165 0.3396 8.8
29 5lb9:A 365 61 0.0864 0.0521 0.3115 8.9 1guf:A, 1guf:B, 5lbx:A, 5lbx:B, 1n9g:A, 1n9g:B, 1n9g:E, 4was:A, 4was:B, 4was:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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