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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AMGKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF
GGRVVKACFYNLDKFRVLDLAEQV

The query sequence (length=104) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6hip:A 104 104 1.0000 1.0000 1.0000 3.73e-71 6hip:B, 5lso:A, 5lso:B, 2peh:A, 2peh:B
2 6slo:A 214 98 0.3750 0.1822 0.3980 1.86e-17 6lur:B, 6lur:C, 6lur:D, 6lur:A, 6lur:E, 6slo:C, 6slo:D
3 7evo:D 200 90 0.2788 0.1450 0.3222 3.37e-05 8hk1:D, 6n3e:A, 6n3f:C, 6nsx:A
4 1jmt:A 98 54 0.2019 0.2143 0.3889 5.53e-05
5 7sn6:B 105 77 0.2596 0.2571 0.3506 1.99e-04 1o0p:A, 1opi:A, 7sn6:A
6 7c06:A 193 65 0.2115 0.1140 0.3385 0.015 7c06:G, 7c06:D, 7c06:J, 7c06:M, 7c06:P, 7c06:S, 7c06:V, 7c06:Y, 7c07:A, 7c07:G, 7c07:D, 7c07:J, 7c07:M, 7c07:P, 7c07:S, 7c07:V, 7c07:Y, 7c08:A, 7c08:G, 7c08:D, 7c08:J, 7c08:M, 7c08:P, 7c08:S, 7c08:V, 7c08:Y, 4yh8:A
7 2x1f:A 94 36 0.1442 0.1596 0.4167 0.089 2km8:B, 2x1a:A
8 7qde:B 169 34 0.1154 0.0710 0.3529 0.21 7qdd:B
9 5cxt:K 113 99 0.2596 0.2389 0.2727 0.24 5cxt:A, 5cxt:C, 5cxt:E, 5cxt:G, 5cxt:I, 5cxt:M, 5cxt:O, 5cxt:Q, 4oz1:B, 4oz1:A, 4ru2:A, 4ru2:C, 4ru2:E, 4ru2:G, 4ru2:I, 4ru2:K, 4ru2:M, 4ru2:O, 4ru2:Q
10 2mqp:A 118 45 0.1635 0.1441 0.3778 0.54 7evr:A, 7evr:C
11 7dco:X 128 34 0.1442 0.1172 0.4412 0.93 5gm6:V, 5zwm:X
12 7evs:A 101 45 0.1731 0.1782 0.4000 1.1 7evs:B
13 2mkc:A 118 34 0.1442 0.1271 0.4412 1.3 2my3:A
14 1c9k:B 180 21 0.1154 0.0667 0.5714 1.8 1c9k:A, 1c9k:C
15 3c5i:D 355 79 0.2404 0.0704 0.3165 3.2 3c5i:C, 3c5i:A, 3c5i:B
16 5erp:A 443 22 0.0865 0.0203 0.4091 3.3 5erp:B
17 8h6e:4R 106 28 0.0865 0.0849 0.3214 3.8 8h6j:4R, 8qp8:R, 8qp9:R, 8qpk:R, 6qw6:R, 6qx9:R, 8qxd:R, 8r08:R, 8r0a:R
18 2fy1:A 108 28 0.0962 0.0926 0.3571 4.0
19 5kw6:A 201 74 0.1731 0.0896 0.2432 4.3 5kvy:A, 5kvy:B, 5kw1:A, 5kw1:B, 5kw6:B, 7q8a:B, 7q8a:A, 2qfj:A, 2qfj:B, 7z3x:A, 7z3x:B
20 4f1n:B 853 38 0.1154 0.0141 0.3158 6.1
21 4f1n:A 904 38 0.1154 0.0133 0.3158 6.1 5the:A, 5the:C, 5the:E, 5the:G
22 4h19:A 372 29 0.0962 0.0269 0.3448 6.1 4h19:B, 4h19:C, 4h19:D, 4h19:F, 4h19:E, 4h19:G, 4h19:H, 4h19:I, 4h19:K, 4h19:L, 4h19:M, 4h19:N, 4h19:P, 4h19:J, 4h19:O
23 7bew:A 330 88 0.1827 0.0576 0.2159 6.9 7bex:A
24 6tp5:A 370 59 0.1538 0.0432 0.2712 7.5 6tp5:B
25 6hpd:A 955 37 0.1346 0.0147 0.3784 7.7
26 4wsi:A 372 52 0.1538 0.0430 0.3077 8.1 7m4r:A, 7ntj:B, 7ntj:A, 7ntk:A, 7ntk:D, 7ntk:B, 7ntk:F, 7qcs:A, 7qcs:B, 4uu5:A, 4wsi:B
27 7rbq:A 614 25 0.1250 0.0212 0.5200 8.5 7t39:A
28 4m54:A 310 46 0.1154 0.0387 0.2609 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218