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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AMFYAHAFGGYDENLHAFPGISSTVANDVRKYSVVSVYNKKYNIVKNKYMWCNSQVNKRYIGALLPMFECNEYLQIGDPI
HDLEGNQISIVTYRHKNYYALSGIGYESLDLCLEGVGIHHHVLETGNAVYGKVQHEYSTIKEKAKEMNALKPGPIIDYHV
WIGDCVCQVTTVDVHGKEIMRMRFKRGAVLPIP

The query sequence (length=193) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ea8:A 195 193 0.9378 0.9282 0.9378 4.54e-138 6ea8:B, 6ea8:E, 6ea8:F, 6ea8:G, 6ea8:H, 6ea9:A, 6ea9:B, 6ea9:C, 6ea9:D, 6ea9:E, 8orv:A, 8p44:A, 8p44:B, 8p44:C, 8p44:D
2 6xb3:A 234 195 0.2850 0.2350 0.2821 0.005 6xb3:B, 6xb3:C, 6xb3:D, 6xb3:E, 6xb3:F, 6xb3:G, 6xb3:H, 6xb3:I, 6xb3:J, 6xb3:K, 6xb3:L, 6xb3:M, 6xb3:N, 6xb3:O, 6xb3:P
3 6xb5:A 240 37 0.0777 0.0625 0.4054 0.017 6xb5:B
4 7dfu:A 191 85 0.1192 0.1204 0.2706 2.0 7dfu:B, 7dfu:C, 7dfu:D, 7dfu:E, 7dfu:F, 7dfu:G
5 4v02:A 244 61 0.0829 0.0656 0.2623 2.5 4v02:B, 4v03:A, 4v03:B
6 6hiv:AY 340 76 0.0984 0.0559 0.2500 2.6 7aoi:AY, 6hix:AY, 6yxx:AY, 6yxy:AY
7 7aih:O 307 50 0.0777 0.0489 0.3000 4.2 7am2:O, 7ane:O
8 1mio:A 525 37 0.0777 0.0286 0.4054 4.4 1mio:C, 5vpw:A, 5vq3:A, 5vq3:C, 4wes:A, 4wes:C, 4wn9:A, 4wn9:C
9 5vpw:C 495 37 0.0777 0.0303 0.4054 5.2
10 7y7q:B 906 58 0.0881 0.0188 0.2931 6.0
11 7y7q:A 951 58 0.0881 0.0179 0.2931 6.0 2j7n:A, 2j7n:B, 2j7o:A, 7y7p:A, 7y7p:B, 7y7r:A, 7y7r:B, 7y7s:A, 7y7s:B, 7y7t:A, 7y7t:B
12 1wxi:A 261 82 0.1140 0.0843 0.2683 6.3 1wxe:A, 1wxg:A, 1wxh:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218