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BioLiP
>protein
AMDKSAKAPVITIFDHRGCSRAPKEYTGSKASGQDDEMMVKAQSVKIAVSDGVAESVLKDSLSVMHK

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7tja:G 67 67 1.0000 1.0000 1.0000 4.23e-44 7tja:Q, 7tja:C, 7tja:K, 7tja:O, 7tlf:C, 7tlf:G, 7tlf:K, 7tlf:O
2 1qgw:B 67 67 0.8209 0.8209 0.8209 9.26e-35 1xf6:B, 1xg0:B
3 1qgw:A 76 64 0.6418 0.5658 0.6719 2.91e-25 1xf6:A, 1xg0:A
4 7t8s:D 70 69 0.6119 0.5857 0.5942 4.16e-23 7t8s:H, 7t8s:L, 7t8s:P
5 7tja:I 75 67 0.5821 0.5200 0.5821 7.95e-21 7tja:A, 7tja:R, 7tja:E, 7tja:M, 7tlf:A, 7tlf:E, 7tlf:I, 7tlf:M
6 7t8s:B 78 64 0.5672 0.4872 0.5938 4.15e-18 7t8s:F, 7t8s:J, 7t8s:N
7 7sut:C 63 60 0.4627 0.4921 0.5167 3.45e-14 7sut:G
8 7t7u:C 70 66 0.4925 0.4714 0.5000 7.80e-14
9 4lms:C 68 65 0.4925 0.4853 0.5077 1.53e-13
10 7t7u:A 81 64 0.3881 0.3210 0.4062 7.55e-12
11 4lms:A 80 60 0.3284 0.2750 0.3667 7.82e-09
12 7sut:A 78 47 0.2388 0.2051 0.3404 5.56e-05 7sut:E
13 7ssf:A 72 58 0.3284 0.3056 0.3793 2.05e-04 7ssf:C, 7ssf:E, 7ssf:G
14 7s96:A 63 58 0.3284 0.3492 0.3793 0.001 7s96:C, 7s97:C, 7t89:A, 7t89:C
15 4lmx:C 66 61 0.3731 0.3788 0.4098 0.002 8el3:A, 8el3:J, 8el3:G, 8el3:K, 8el4:A, 8el4:F, 8el5:A, 8el5:J, 8el5:K, 8el5:G, 8el6:A, 8el6:F
16 4lmx:E 66 61 0.3731 0.3788 0.4098 0.003 8el3:C, 8el3:I, 8el3:E, 8el3:L, 8el4:C, 8el4:E, 8el5:C, 8el5:I, 8el5:E, 8el5:L, 8el6:C, 8el6:E, 4lmx:A, 4lmx:G, 4lmx:I, 4lmx:K
17 4lm6:A 62 57 0.2836 0.3065 0.3333 0.95 4lm6:C
18 2j7a:B 498 26 0.1642 0.0221 0.4231 3.2 2j7a:A, 2j7a:D, 2j7a:E, 2j7a:G, 2j7a:H, 2j7a:J, 2j7a:K, 2j7a:M, 2j7a:N, 2j7a:P, 2j7a:Q, 2vr0:A, 2vr0:B, 2vr0:D, 2vr0:E
19 9iq9:B 275 43 0.2090 0.0509 0.3256 6.4 7euk:A, 7euk:B, 7eul:A, 7eun:A, 7eun:B, 7euq:A, 7euq:B, 9iq9:A, 8ius:A, 8ius:B, 8iut:A, 8iut:B, 8iuu:A, 8iuu:B, 8iuv:A, 8iuv:B, 8iuw:A, 8iuw:B, 6lug:A, 6lug:B, 6luh:A, 6luh:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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