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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AMDIVFIEELSVITTIYDWEQTIQQKLVFDIEMGWDNRKAADDVNDCLSYADISEAVIQHVGSQRFALVERVAEEVAELL
LRRFNSPWVRIKVSKPGAVAQAKNVGVIIERGQ

The query sequence (length=113) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7su7:D 119 117 1.0000 0.9496 0.9658 5.84e-76 6ojo:A, 6ojo:C, 6ojo:B, 6ojo:D, 7su4:A, 7su4:D, 7su4:B, 7su4:C, 7su6:A, 7su6:C, 7su6:B, 7su6:D, 7su7:B, 7su7:A, 7su7:C, 7su8:A, 7su8:B
2 2o90:A 115 115 0.8496 0.8348 0.8348 1.28e-63
3 5f3m:A 120 114 0.2478 0.2333 0.2456 8.12e-05 5f3m:B, 5far:A, 5far:B, 5far:C, 5far:D, 5far:E, 5far:H, 5far:F, 5far:G, 8sv5:A, 8sv5:G, 8sv5:B, 8sv5:H, 8sv5:C, 8sv5:D, 8sv5:F, 8sv5:E
4 1nbu:A 118 102 0.2566 0.2458 0.2843 0.002 1nbu:D, 1nbu:B, 1nbu:C, 1nbu:E, 1nbu:H, 1nbu:F, 1nbu:G
5 4xeq:B 304 34 0.1239 0.0461 0.4118 0.99 4xeq:A, 4xeq:C, 4xeq:D
6 1kgz:B 330 86 0.2124 0.0727 0.2791 1.3 1kgz:A
7 3zyp:A 218 74 0.1416 0.0734 0.2162 1.8
8 3zqj:D 921 63 0.1858 0.0228 0.3333 4.8 3zqj:B, 3zqj:E
9 3oib:A 381 47 0.1416 0.0420 0.3404 5.8 3oib:B, 3p4t:A, 3p4t:B
10 7qoe:A 187 40 0.1062 0.0642 0.3000 5.9
11 4qpe:A 867 82 0.2124 0.0277 0.2927 8.1 5dyf:A, 2gtq:A, 4pu2:A, 4pvb:A, 4pw4:A, 4qhp:A, 4qir:A, 4qme:A, 4quo:A
12 8psn:A 417 46 0.1327 0.0360 0.3261 9.0 8pso:A, 8psq:A, 8pss:A, 8psu:A, 8psx:A, 8psz:A, 8pt2:A, 8pt6:A, 8pt7:A, 8pth:A, 8ptj:A, 8qz8:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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