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BioLiP
>protein
AMDARSVNGEFPRHVKLKNEIENLLDQVTQLYTKHNSNYQQYNAQAGRLDLRQKAEYLKGLNDWAERLLQELNGEDVKKV
LGKVAFEKDDLEKEVKELKEKIDKKE

The query sequence (length=106) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8p6j:CCC 106 105 0.9906 0.9906 1.0000 3.94e-72 8p6j:BBB, 8p6j:FFF
2 6c7n:D 389 68 0.1792 0.0488 0.2794 0.30
3 8h68:A 624 76 0.1887 0.0321 0.2632 0.46 8hb2:A, 8hb2:B, 8hb2:C, 8hb2:D, 8hbb:A, 8hbb:B, 8hbb:C, 8hbb:D
4 3j5s:D 554 81 0.1981 0.0379 0.2593 0.55
5 7auk:A 168 43 0.1415 0.0893 0.3488 0.76 7aui:A, 7auj:A, 7aul:A, 7aum:A, 7aun:A, 7aup:A, 7aus:A
6 7auo:A 149 43 0.1415 0.1007 0.3488 0.95 7auq:A, 7aur:A, 7auu:A
7 3zha:A 380 29 0.0943 0.0263 0.3448 1.0 4au2:A, 4au2:B, 4au2:D, 4au3:A, 4au3:B, 4au3:C, 4au3:D, 7bdu:A, 7bdu:B, 7bee:A, 7bee:B, 7bfi:A, 7bfi:C, 7bfi:D, 7bfi:B, 3zha:B, 3zha:C, 3zha:D, 3zha:K, 3zha:L, 3zha:P, 3zha:Q
8 5gvh:A 311 26 0.1038 0.0354 0.4231 1.2
9 7t7n:B 440 82 0.2075 0.0500 0.2683 1.2 8tkz:B
10 6c7n:A 553 68 0.1792 0.0344 0.2794 1.3 6c7n:B, 6c7n:C
11 8v5r:A 944 76 0.2170 0.0244 0.3026 1.8 8g5i:A, 8g5l:A, 8g5m:A, 8g5n:A, 8g5o:A, 8g5p:A, 8t7e:A
12 3zs7:A 277 76 0.2358 0.0903 0.3289 1.9
13 6a0q:B 315 22 0.1038 0.0349 0.5000 2.1
14 6u3e:A 397 91 0.2358 0.0630 0.2747 3.7 6u3e:B, 6u3g:A, 6u3g:B
15 8d33:A 974 74 0.2075 0.0226 0.2973 4.0 8d37:A, 8d3r:A, 8d42:A, 8udl:A, 8v54:A
16 8udk:A 1012 74 0.2075 0.0217 0.2973 4.7 5c51:A, 5c52:A, 5c53:A, 4ztu:A, 4ztz:A
17 4v8p:BB 386 49 0.1981 0.0544 0.4286 5.1 4v8p:CB, 4v8p:EB, 4v8p:GB
18 8g5j:A 941 74 0.2075 0.0234 0.2973 5.8
19 4u5x:A 178 39 0.1226 0.0730 0.3333 6.8
20 2xr1:B 611 59 0.1604 0.0278 0.2881 8.4 2xr1:A
21 5faw:B 806 24 0.1226 0.0161 0.5417 9.5 5fau:A, 5fau:B, 5fau:C, 5fau:D, 5faw:A, 5fay:A, 5fay:B, 6nd3:A, 6nd3:B, 6nd3:C, 6nd3:D, 6nd3:E, 6nd3:F, 6nd3:G, 6nd3:H, 6vue:A, 6vue:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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