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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AMANAVIGNVVTRFPPEPSGYLHVGHAKAAFLNNYYAQMYEGKMLLRFDDTNPVKYEKSIIEDLENLGLKYEKISYSSDH
FDLLEKYCIDMIKMNKAYADDTGVEDMRNQRGEGIESINRNNSIEKNLELFNEMRKGTEIGQKNCIRAKINMQSKNKCMR
DPVMYRCIVDVPKYKCYPTYDFACPIIDSIEGVTHALRTNEDRIEQYNWFISTLNLRKVYIYEFSRLAFVKTVMSKRKLK
WFVENNVVDSWVDPRFPTIKGILRRGLTKEALFQFILEQNLMQWDKLWSINKQIIDPIIPRYAAVDKNSSILLILTDLTD
QVIQKERDLHMKNKSLGTCNMYYNNKYLIELEDAQTLLENEEITLIKLGNIIIKNIEKENGKIKQINALSNFHTTKKKIH
WLPYLPQQLITCTLYEYDHLITVDKDWTNFINFNSKHETLVYAEPSISSLKVSDKFQFERRGYFILDKIDPHHHLHLIKI
PDGK

The query sequence (length=484) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7wao:A 502 507 0.9897 0.9542 0.9448 0.0 7waj:A, 7wak:A, 7wal:A
2 4jyz:A 542 513 0.3698 0.3303 0.3489 2.67e-73 1euq:A, 1euy:A, 1exd:A, 1gtr:A, 1gts:A, 4jxx:A, 4jxz:A, 1o0b:A, 1o0c:A, 1qrs:A, 1qrt:A, 1qru:A, 1qtq:A, 2rd2:A, 2re8:A, 1zjw:A
3 5zdk:A 543 512 0.3471 0.3094 0.3281 5.21e-68 5zdl:A
4 4h3s:A 585 433 0.2975 0.2462 0.3326 9.26e-58
5 8uk6:A 573 434 0.2955 0.2496 0.3295 5.50e-56
6 3aii:A 455 488 0.2727 0.2901 0.2705 8.53e-41
7 2cuz:A 468 270 0.1570 0.1624 0.2815 1.27e-14 2cv0:A, 2cv0:B, 2cv1:A, 2cv1:B, 2cv2:A, 2cv2:B, 2dxi:A, 2dxi:B, 1g59:A, 1g59:C, 1j09:A, 1n75:A, 1n77:A, 1n77:B, 1n78:A, 1n78:B
8 2cfo:A 484 219 0.1178 0.1178 0.2603 1.47e-10
9 8vc5:A 488 264 0.1364 0.1352 0.2500 1.51e-10 8vc5:B
10 3al0:C 564 215 0.1012 0.0869 0.2279 4.14e-08 3afh:A, 3akz:B, 3akz:D, 3akz:C, 3akz:A
11 8i9i:A 468 331 0.1529 0.1581 0.2236 5.31e-07 8i9i:B
12 4gri:B 485 220 0.1198 0.1196 0.2636 4.15e-06 4gri:A
13 6brl:A 502 232 0.1157 0.1116 0.2414 4.87e-06
14 4g6z:A 380 71 0.0475 0.0605 0.3239 1.10e-05
15 4a91:A 290 66 0.0455 0.0759 0.3333 5.86e-05 1nzj:A
16 2zue:A 628 118 0.0620 0.0478 0.2542 0.12 2zuf:A
17 3k6p:A 226 73 0.0372 0.0796 0.2466 7.2 3d24:A, 3d24:C, 7e2e:A, 7e2e:B, 2pjl:A, 2pjl:B, 1xb7:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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