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BioLiP
>protein
AMALSYSSPLRFFRNFRFHPEFTRLVAGGWRSLTYSSRIDPDKEMCPYELEGTQCPSGCSFQHFVDITP

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6yfv:B 79 67 0.9710 0.8481 1.0000 4.76e-47 6yfv:D, 6ygu:B, 6ygu:D
2 8t2v:A 946 33 0.1884 0.0137 0.3939 0.52 4cak:A, 3fcs:A, 3fcs:C, 3fcu:A, 3fcu:C, 3fcu:E, 8gcd:A, 8gce:A, 5hdb:A, 5hdb:C, 7l8p:A, 7l8p:C, 7la4:A, 3nid:A, 3nid:C, 3nif:A, 3nif:C, 3nig:A, 3nig:C, 8t2u:A, 3t3m:A, 3t3m:C, 3t3p:A, 3t3p:C, 7tct:A, 7tct:C, 7td8:A, 7td8:C, 7tho:A, 7tho:C, 7tmz:A, 7tmz:C, 7tpd:A, 7tpd:C, 1tye:A, 1tye:C, 1tye:E, 7u60:A, 7u60:C, 7u9f:A, 7u9f:C, 7u9v:A, 7u9v:C, 7ubr:A, 7ubr:C, 7ucy:A, 7ucy:C, 7udg:A, 7udg:C, 7udh:A, 7udh:C, 7ue0:A, 7ue0:C, 7ufh:A, 7ufh:C, 7uh8:A, 7uh8:C, 7uje:A, 7uje:C, 7ujk:A, 7ujk:C, 7uk9:A, 7uk9:C, 7uko:A, 7uko:C, 7ukp:A, 7ukp:C, 7ukt:A, 7ukt:C, 6v4p:A, 2vc2:A, 2vdk:A, 2vdl:A, 2vdm:A, 2vdn:A, 2vdo:A, 2vdp:A, 2vdq:A, 2vdr:A, 4z7n:A, 4z7n:C, 4z7o:A, 4z7o:C, 4z7q:A, 4z7q:C, 3zdx:A, 3zdx:C, 3zdy:A, 3zdy:C, 3zdz:A, 3zdz:C, 3ze0:A, 3ze0:C, 3ze1:A, 3ze1:C, 3ze2:A, 3ze2:C
3 8qx0:A 335 63 0.2899 0.0597 0.3175 0.58 8qwx:A
4 2gmh:A 581 33 0.1739 0.0207 0.3636 1.3 2gmh:B, 2gmj:A, 2gmj:B
5 6xiw:A 1256 49 0.2174 0.0119 0.3061 2.1
6 7cu3:A 1277 49 0.2174 0.0117 0.3061 2.1
7 7sx3:A 1386 49 0.2174 0.0108 0.3061 2.3 7sx4:A
8 7mq8:LP 567 41 0.2029 0.0247 0.3415 2.4 7mq9:LP, 7mqa:LP
9 1m1j:B 402 26 0.1594 0.0274 0.4231 2.5 1m1j:E
10 5n29:A 265 13 0.1304 0.0340 0.6923 4.3
11 1og6:C 298 17 0.1159 0.0268 0.4706 5.5 1og6:A, 1og6:B
12 2wa2:A 223 41 0.2174 0.0673 0.3659 5.8
13 2wa2:B 259 41 0.2174 0.0579 0.3659 5.8
14 5k8k:A 237 23 0.1594 0.0464 0.4783 6.6
15 8gol:B 355 24 0.1449 0.0282 0.4167 8.2 8gol:A, 8gol:C, 8gol:D, 8goy:A, 8ive:A, 8ive:B, 8ivh:A, 8ivh:B, 8ivm:A, 8ivm:B, 8ivn:A, 8ivn:B, 8ivs:A, 8ivs:B, 8ivt:A, 8ivt:B, 8iw3:A, 8iw3:B, 8iw6:A, 8iw6:B, 8j7g:A, 8j7g:B, 8j7i:A, 8j7i:B, 8j7j:A, 8j7j:B, 8j7k:A, 8j7k:B, 8j7l:A, 8j7l:B, 7y0l:A, 7y0l:B, 7yd2:A, 7yd2:B
16 8cem:B 974 16 0.1159 0.0082 0.5000 9.3
17 5jj2:A 211 29 0.1449 0.0474 0.3448 9.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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