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BioLiP
>protein
AMAKQTIIVMSDSHGDSLIVEEVRDRYVGKVDAVFHNGDSELRPDSPLWEGIRVVKGNMDFYAGYPERLVTELGSTKIIQ
THGHLFDINFNFQKLDYWAQEEEAAICLYGHLHVPSAWLEGKILFLNPGSISQPRGTIRECLYARVEIDDSYFKVDFLTR
DHEVYPGLSKEFSR

The query sequence (length=174) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ck2:A 174 174 1.0000 1.0000 1.0000 4.37e-131
2 1su1:A 184 64 0.1379 0.1304 0.3750 1.14e-05 1su1:B, 1su1:C, 1su1:D
3 5xch:A 180 81 0.1494 0.1444 0.3210 2.45e-04 5xch:B
4 8tta:C 188 81 0.1322 0.1223 0.2840 3.66e-04 8ese:Z, 8fud:A, 8fud:B, 5gtu:A, 5osi:A, 5osi:D, 5osi:G, 3psn:A, 3psn:B, 3pso:A, 3pso:B, 8r02:B, 8rks:A, 8rks:E, 8rks:G, 8rks:C, 8tta:A, 8ttd:A, 6xs5:A, 6xs7:A, 6xs9:A, 6xs9:B, 6xsa:A, 1z2w:A, 1z2w:B
5 3qfm:A 258 115 0.1954 0.1318 0.2957 0.20 3qfm:B, 3qfn:A, 3qfn:B, 3qfo:A, 3qfo:B
6 1qjs:A 408 28 0.0690 0.0294 0.4286 3.0 1qhu:A, 1qjs:B
7 1ci0:A 205 31 0.0690 0.0585 0.3871 4.7 1ci0:B
8 6zcv:A 562 56 0.0920 0.0285 0.2857 4.8 6zcw:A
9 1s0u:A 391 140 0.2241 0.0997 0.2786 5.9
10 3rqz:C 245 85 0.1207 0.0857 0.2471 9.3 3rqz:A, 3rqz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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