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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AMAGVFTYESEFTSVIPPPKLFKAFVLDADNLIPKIAPQAVKSAEIIEGDGGVGTIKKIHLGSYVKHKIDGIDKDNFVYS
YSIIEGDAIGDKIEKISYEIKLVASGGGSIIKSTSHYHTKGEVEIKEEHVKAGKERAAGLFKIIENHLLAHPEEYN

The query sequence (length=156) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4c94:A 161 161 1.0000 0.9689 0.9689 1.22e-106 4c94:B, 4c94:C, 4c94:D, 4c94:E
2 4c9i:F 162 162 0.7692 0.7407 0.7407 3.49e-76
3 4a80:A 159 159 0.5833 0.5723 0.5723 1.10e-56 4a81:A, 4a83:A, 4a84:A, 4a85:A, 4a86:A, 4a87:A, 4a8g:A, 4a8v:A, 1fm4:A, 4mns:A, 4qip:A
4 2qim:A 157 159 0.5192 0.5159 0.5094 4.24e-42 3e85:A, 5mxb:A, 5mxw:A
5 6awr:A 156 158 0.4808 0.4808 0.4747 3.84e-41 6awr:B, 6aws:A, 6aws:C, 6awt:A, 6awt:B, 6awt:C, 6awt:D, 6awu:A, 6awu:B, 6awu:C, 6awu:D, 6awv:A, 6awv:B, 6awv:C, 6aww:B, 6aww:E, 6aww:D, 6aww:C, 6ax0:A, 6ax0:B, 6b1d:A, 6b1d:C, 4ma6:A
6 6v8l:D 152 153 0.4423 0.4539 0.4510 4.19e-38 6v8m:A, 6v8m:B, 6v8s:A, 6v8s:G, 6v8s:B, 6v8s:C, 6v8s:D, 6v8s:F, 6v8s:E, 6v8s:H, 6v8s:I, 6v8s:O, 6v8s:J, 6v8s:K, 6v8s:L, 6v8s:N, 6v8s:M, 6v8s:P
7 8h3j:A 162 159 0.4167 0.4012 0.4088 4.99e-37
8 4ryv:A 155 156 0.4615 0.4645 0.4615 5.53e-37
9 5i8f:A 164 153 0.4551 0.4329 0.4641 6.35e-37 4n3e:A, 4n3e:B, 4n3e:Z, 4n3e:b, 4n3e:C, 4n3e:D, 4n3e:E, 4n3e:F, 4n3e:G, 4n3e:H, 4n3e:I, 4n3e:J, 4n3e:K, 4n3e:L, 4n3e:P, 4n3e:M, 4n3e:N, 4n3e:O, 4n3e:Q, 4n3e:S, 4n3e:R, 4n3e:U, 4n3e:V, 4n3e:W, 4n3e:X, 4n3e:Y, 4n3e:a, 6sjj:B, 6sjj:j, 6sjj:A, 6sjj:R, 6sjj:Q, 6sjj:P, 6sjj:O, 6sjj:N, 6sjj:M, 6sjj:L, 6sjj:K, 6sjj:J, 6sjj:I, 6sjj:a, 6sjj:Y, 6sjj:H, 6sjj:G, 6sjj:F, 6sjj:D, 6sjj:f, 6sjj:E, 6sjj:C, 6sjj:e, 6sjj:d, 6sjj:c, 6sjj:b, 6sjj:Z, 6sjj:X, 6sjj:W, 6sjj:V, 6sjj:U, 6sjj:T, 6sjj:S, 6sjj:i, 6sjj:h, 6sjj:g
10 1txc:A 157 158 0.4423 0.4395 0.4367 1.16e-36 1txc:B
11 7qb6:A 164 159 0.4423 0.4207 0.4340 7.17e-35 4gy9:A, 4jhg:A, 4jhh:A, 4jhi:A
12 4q0k:A 154 139 0.2436 0.2468 0.2734 8.79e-06
13 2flh:B 153 71 0.1538 0.1569 0.3380 2.75e-05 3c0v:A, 3c0v:B, 3c0v:C, 3c0v:D, 2flh:A, 2flh:C, 2flh:D, 4psb:A
14 2vq5:A 173 108 0.2308 0.2081 0.3333 5.66e-04 5non:A, 5non:B, 5non:C, 6rp3:A, 2vq5:B, 6z82:A
15 3nj1:A 182 75 0.1218 0.1044 0.2533 0.068 5jnn:A, 3kaz:B, 3kb0:A, 3kb3:A, 3kdi:A, 4la7:A, 4lg5:A, 4lga:A, 4lgb:A, 7mwn:A, 3nj0:A, 3nj0:B, 3nj0:C, 3nmh:A, 3nmh:B, 3nmh:C, 3nmp:A, 3nmp:B, 3nmp:C, 3nmt:A, 3nmv:A, 3nr4:A, 3nr4:B, 3nr4:C, 3ns2:A, 3ns2:B, 3ns2:C, 3ujl:A, 5vr7:A, 5vro:A, 5vs5:A, 5vsq:A, 5vsr:A, 5vt7:A
16 6heg:A 783 38 0.0769 0.0153 0.3158 3.9
17 3q31:A 236 48 0.0833 0.0551 0.2708 5.1 3q31:B
18 1md9:A 536 45 0.1026 0.0299 0.3556 5.3 1mdb:A
19 6e97:B 537 45 0.0897 0.0261 0.3111 5.5 6e8o:A, 6e8o:B, 6e97:A
20 4j6c:A 407 57 0.1154 0.0442 0.3158 8.6 4j6b:A, 4j6b:B, 4j6c:B, 4j6d:A, 4j6d:B, 4jbt:A, 4jbt:B, 6to2:A, 6to2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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