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BioLiP
>protein
AMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNYL
KAAPVELRQWLEEVLLK

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6enn:B 106 97 0.9691 0.8868 0.9691 1.00e-63 1co0:A, 1co0:B, 6ejw:A, 6ejw:B, 6ejw:C, 6ejw:D, 6ejz:A, 6ejz:C, 6ejz:B, 6ejz:D, 6ekp:A, 6ekp:B, 6elb:A, 6elb:B, 6elf:A, 6elf:B, 6elg:A, 6elg:B, 6eni:A, 6eni:B, 6enn:A, 6f7f:B, 6f7f:A, 6f7f:D, 6f7f:C, 6f7g:A, 6f7g:C, 6f9k:A, 6fal:A, 6fal:B, 1jhg:A, 2oz9:R, 1rcs:A, 1rcs:B, 6st7:A, 1tro:A, 1tro:C, 1tro:E, 1tro:G, 1trr:A, 1trr:B, 1trr:E, 1trr:G, 1trr:H, 1trr:D, 1trr:J, 1trr:K, 1wrp:R, 1wrs:R, 1wrs:S, 1zt9:A, 1zt9:B, 1zt9:D, 1zt9:E
2 8t6x:A 1278 112 0.2990 0.0227 0.2589 0.51
3 8t7s:A 1312 112 0.2990 0.0221 0.2589 0.54
4 5b2r:B 1319 102 0.3093 0.0227 0.2941 0.57 5b2s:B, 5fq5:B, 5fw1:B, 8g1i:A, 6k3z:B, 6k4s:B, 6k4u:B, 6k57:B, 7qqw:B, 4un3:B, 4un4:B, 4un5:B, 8wus:A, 8wut:A, 8wuu:A
5 6o0z:A 1288 100 0.3093 0.0233 0.3000 0.69
6 4lut:A 375 48 0.1753 0.0453 0.3542 0.81 4lus:B, 4lut:B
7 6o0y:A 1146 112 0.2990 0.0253 0.2589 1.0
8 4oo8:A 1301 48 0.1340 0.0100 0.2708 2.3 4zt0:C
9 4oo8:D 1163 48 0.1340 0.0112 0.2708 2.4
10 6n8j:m 378 26 0.1134 0.0291 0.4231 2.7
11 8kag:B 1346 105 0.2990 0.0215 0.2762 3.1 8kah:F, 8kai:F, 8kaj:F, 8spq:A, 8sqh:A, 8srs:A, 8tzz:A, 8u3y:A, 6vpc:B, 7z4h:B, 7z4i:B, 7z4l:B, 4zt9:A
12 4cmq:B 1168 48 0.1340 0.0111 0.2708 3.3 4cmp:B, 4cmq:A
13 3r75:B 622 51 0.1649 0.0257 0.3137 3.4 3r75:A, 3r76:A, 3r76:B
14 7btb:m 469 26 0.1134 0.0235 0.4231 3.6 7bt6:m, 6ft6:m, 3jct:m, 6m62:m, 7oh3:m, 7ohq:m, 7oht:m, 7ug6:m, 7uoo:m, 7uqb:m, 7uqz:m, 7uui:m, 7v08:m, 6ylg:m, 6ylh:m
15 8t6t:A 1168 48 0.1443 0.0120 0.2917 4.2 8t7s:G
16 4czm:A 336 57 0.1546 0.0446 0.2632 5.2 4czf:A, 4czg:A, 4czh:A, 4czj:A, 4czj:B, 4czk:A, 4czl:A, 4czm:B
17 8av6:C 459 45 0.1649 0.0349 0.3556 5.7 8av6:A, 8av6:B, 6fhs:A, 6fhs:B, 6fhs:C, 6fml:A, 6fml:B, 6fml:C, 8oo7:A, 8oo7:B, 8oo7:C, 8ooc:A, 8ooc:B, 8ooc:C, 8oop:A, 8oop:B, 8oop:C, 8oor:A, 8oor:B, 8oor:C, 4wvy:A
18 8t76:A 1088 48 0.1340 0.0119 0.2708 6.1
19 8t6y:A 1148 48 0.1340 0.0113 0.2708 6.2 8t6o:A, 8t79:A
20 5zw4:A 216 25 0.1237 0.0556 0.4800 6.7 5zw3:A
21 3jsz:A 520 68 0.2062 0.0385 0.2941 6.8 3jt1:A, 2wzg:A
22 5zw3:B 193 25 0.1237 0.0622 0.4800 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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