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BioLiP
>protein
ALVDVFIKLDGTGNLLVLRTLPGNAHAIGVLLDNLDWDEIVGTICGDDTCLIICRTPKDAKKVSNQLLSML

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1b4b:A 71 71 1.0000 1.0000 1.0000 4.51e-46 1b4b:C, 1b4b:B
2 2p5m:A 82 71 0.6338 0.5488 0.6338 3.02e-31 2p5m:B, 2p5m:C
3 6wjp:A 80 64 0.3380 0.3000 0.3750 5.31e-13 5jvo:A, 5jvo:B, 6wjo:A, 6wjo:B, 6wjp:B
4 3fhz:D 166 64 0.3521 0.1506 0.3906 2.89e-12 3cag:A, 3cag:C, 3cag:E, 3cag:B, 3cag:D, 3cag:F, 3ere:D, 3fhz:C, 3fhz:E, 3fhz:B, 3fhz:F, 3fhz:A, 3laj:C, 3laj:E, 3laj:B, 3laj:F, 3laj:A, 3laj:D, 3lap:C, 3lap:E, 3lap:B, 3lap:F, 3lap:A, 3lap:D, 2zfz:A, 2zfz:C, 2zfz:F, 2zfz:B, 2zfz:D, 2zfz:E
5 1xxa:C 73 71 0.3662 0.3562 0.3662 5.09e-04 1xxa:A, 1xxa:B, 1xxa:D, 1xxa:F, 1xxa:E, 1xxb:A, 1xxb:C, 1xxb:B, 1xxb:D, 1xxb:E, 1xxb:F
6 5l5a:Y 211 27 0.1690 0.0569 0.4444 2.7 5l5a:K, 5l5b:Y, 5l5b:K, 5l5d:Y, 5l5d:K, 5l5e:Y, 5l5e:K, 5l5f:Y, 5l5f:K, 5l5h:Y, 5l5h:K, 5l5i:Y, 5l5i:K, 5l5j:Y, 5l5j:K, 5l5o:Y, 5l5o:K, 5l5p:Y, 5l5p:K, 5l5q:Y, 5l5q:K, 5l5r:Y, 5l5r:K, 5l5s:Y, 5l5s:K, 5l5t:Y, 5l5t:K, 5l5u:Y, 5l5u:K, 5l5v:Y, 5l5v:K, 5l65:Y, 5l65:K, 5l66:Y, 5l66:K, 5l67:Y, 5l67:K, 5l68:Y, 5l68:K, 5l69:Y, 5l69:K, 5l6a:Y, 5l6a:K, 5l6b:Y, 5l6b:K, 5l6c:Y, 5l6c:K, 5ltt:K, 5ltt:Y, 5m2b:Y, 5m2b:K
7 6bbm:A 405 20 0.1127 0.0198 0.4000 3.3
8 6bbm:D 455 20 0.1127 0.0176 0.4000 3.3 6bbm:F, 6bbm:B, 6bbm:C, 6bbm:E, 6qel:A, 6qel:B, 6qel:C, 6qel:D, 6qel:E, 6qel:F, 6qem:A, 6qem:B, 6qem:C, 6qem:D, 6qem:E, 6qem:F, 7t20:B, 7t20:C, 7t20:E, 7t20:F, 7t20:D, 7t21:A, 7t21:B, 7t21:C, 7t21:D, 7t21:E, 7t21:F, 7t22:A, 7t22:B, 7t22:C, 7t22:D, 7t22:E, 7t22:F, 7t23:A, 7t23:B, 7t23:C, 7t23:D, 7t23:E, 7t23:F
9 7kgb:k 117 31 0.1549 0.0940 0.3548 3.9 6dzi:t, 6dzk:K, 8fr8:m, 7msc:k, 7msh:k, 7msm:k, 7msz:k, 7mt2:k, 7mt3:k, 7mt7:k, 5o5j:K, 5o61:BK, 7sfr:k, 5v93:k, 8v9j:k, 8v9k:k, 8v9l:k, 8whx:l, 8wi7:l, 8wi9:l, 8wib:l, 8wid:l, 8wif:l, 5xyu:K, 5zeb:k, 5zep:k, 5zeu:k
10 2zkt:B 381 22 0.1408 0.0262 0.4545 4.4
11 2zkt:A 330 22 0.1408 0.0303 0.4545 5.5
12 5ubv:A 244 32 0.1690 0.0492 0.3750 6.7 5ubv:B
13 7uhy:A 771 57 0.2254 0.0208 0.2807 7.8 7uhy:B
14 4r81:A 199 45 0.1972 0.0704 0.3111 8.9 4r81:B, 4r81:C, 4r81:D
15 8r42:B 362 32 0.1549 0.0304 0.3438 9.9 8r41:A, 8r41:B, 8r42:A, 8r4x:A, 8r4x:B, 8r4x:C, 8r4x:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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