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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ALTNAQILAVIDSWEETVGQFPVITHHVPLGGGLQGTLHCYEIPLAAPYGVGFAKNGPTRWQYKRTINQVVHRWGSHTVP
FLLEPDNINGKTCTASHLCHNTRCHNPLHLCWESADDNKGRNWCPGPNGGCVHAVVCLRQGPLYGPGATVAGPQQRGSHF
VV

The query sequence (length=162) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1a73:A 162 162 0.9938 0.9938 0.9938 3.79e-119 1a73:B, 1a74:A, 1a74:B, 1cyq:A, 1cyq:B, 1cz0:A, 1cz0:B, 1evw:A, 1evw:B, 1evw:C, 1evw:D, 1evx:A, 1evx:B, 1ipp:A, 1ipp:B, 2o6m:A, 2o6m:B, 8vmo:A, 8vmo:B, 8vmp:A, 8vmp:B, 8vmq:A, 8vmq:B, 8vmr:A, 8vmr:B, 8vms:A, 8vms:B, 8vmt:A, 8vmt:B, 8vmu:A, 8vmu:B, 8vmv:A, 8vmv:B, 8vmw:A, 8vmw:B, 8vmx:A, 8vmx:B, 8vmy:A, 8vmy:B, 8vmz:A, 8vmz:B, 8vn0:A, 8vn0:B, 8vn1:A, 8vn1:B, 8vn2:A, 8vn2:B, 8vn3:A, 8vn3:B, 8vn4:A, 8vn4:B, 8vn5:A, 8vn5:B, 8vn6:A, 8vn6:B, 8vn7:A, 8vn7:B, 8vn8:A, 8vn8:B, 8vn9:A, 8vn9:B, 8vna:A, 8vna:B, 8vnb:A, 8vnb:B, 8vnc:A, 8vnc:B, 8vnd:A, 8vnd:B, 8vne:A, 8vne:B, 8vnf:A, 8vnf:B, 8vng:A, 8vng:B, 8vnh:A, 8vnh:B, 8vnj:A, 8vnj:B, 8vnk:A, 8vnk:B, 8vnl:A, 8vnl:B, 8vnm:A, 8vnm:B, 8vnn:A, 8vnn:B, 8vno:A, 8vno:B, 8vnp:A, 8vnp:B, 8vnq:A, 8vnq:B, 8vnr:A, 8vnr:B, 8vns:A, 8vns:B, 8vnt:A, 8vnt:B, 8vnu:A, 8vnu:B
2 7omy:AAA 209 64 0.1049 0.0813 0.2656 0.97 7omw:AAA, 7omx:AAA, 7omz:AAA, 7on0:AAA
3 2fy3:A 595 56 0.1296 0.0353 0.3750 1.0 7amd:A, 2fy4:A, 2fy5:A
4 8pha:A 450 51 0.1049 0.0378 0.3333 2.5 8pha:B
5 7yj0:D 622 69 0.1235 0.0322 0.2899 7.2 7yj0:A, 7yj0:B, 7yj0:C
6 8xon:O 593 41 0.0864 0.0236 0.3415 7.3 8xon:S, 8xon:R, 8xon:Q, 8xon:P, 8xon:T, 8xoo:R, 8xoo:Q, 8xoo:P, 8xoo:T, 8xoo:S

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218