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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTF
RPGQKLKSRVENASPK

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2iie:A 204 93 0.9583 0.4510 0.9892 1.22e-62 2ht0:A, 1ihf:A, 2iif:A, 5j0n:I, 5j0n:K, 1ouz:A, 1owf:A, 1owg:A, 5wfe:K
2 8flj:G 98 91 0.8021 0.7857 0.8462 2.28e-52 8flj:E
3 4qju:A 90 90 0.3646 0.3889 0.3889 2.32e-19 4qju:B
4 8flj:F 94 90 0.3438 0.3511 0.3667 1.71e-16 8flj:H
5 6o8q:B 91 90 0.3438 0.3626 0.3667 2.93e-15 6o8q:G, 6o8q:H, 6o8q:F, 4yf0:B, 4yfh:B
6 4dky:B 101 92 0.3750 0.3564 0.3913 7.19e-15
7 1p71:A 94 95 0.3542 0.3617 0.3579 8.57e-15 1p51:A, 1p51:B, 1p51:D, 1p51:C, 1p71:B, 1p78:A, 1p78:B
8 1ihf:B 94 90 0.3021 0.3085 0.3222 8.47e-13 2ht0:B, 5j0n:J, 5j0n:L, 1ouz:B, 1owf:B, 1owg:B, 5wfe:L
9 2np2:A 102 79 0.2917 0.2745 0.3544 1.22e-11 2np2:B
10 6oaj:B 79 90 0.2708 0.3291 0.2889 6.21e-06 6o6k:A, 6o8q:A, 6o8q:I, 6oaj:C, 4yey:C, 4yf0:A, 4yfh:A
11 4yew:C 71 56 0.1875 0.2535 0.3214 1.95e-04 6o6k:B, 6oaj:D, 4yex:C, 4yft:C
12 6lmj:A 99 72 0.2188 0.2121 0.2917 0.079 6lmj:B
13 4xwh:A 720 36 0.1354 0.0181 0.3611 0.44
14 4k9q:A 531 46 0.1979 0.0358 0.4130 1.2 4k9q:B
15 5i8s:A 179 42 0.1667 0.0894 0.3810 3.9 5i8t:A, 5i8y:A, 5i91:A, 5i93:A
16 5bu3:A 181 56 0.1458 0.0773 0.2500 7.5 5bu3:B, 5bu3:C, 5bu3:D, 7dvk:A, 7dvk:B, 7dvk:C, 7dvk:D
17 7jxg:A 178 34 0.1354 0.0730 0.3824 8.6 4qgn:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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