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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ALTFAKRLKADTTAVHDSVDNLVMSVQPFVSKENYIKFLKLQSVFHKAVDHIYKDAELNKAIPELEYMARYDAVTQDLKD
LGEEPYKFDKELPYEAGNKAIGWLYCAEGSNLGAAFLFKHAQKLDYNGEHGARHLAPHPDGRGKHWRAFVEHLNALNLTP
EAEAEAIQGAREAFAFYKVVLRETFGLAADAEAPEGMMP

The query sequence (length=199) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1j77:A 199 199 1.0000 1.0000 1.0000 1.15e-148 1p3t:A, 1p3u:A, 1p3v:A
2 1sk7:A 187 184 0.3518 0.3743 0.3804 7.58e-21
3 6k0a:I 116 128 0.1407 0.2414 0.2188 0.58 6k0a:J, 6k0b:I, 6k0b:J, 1sds:A, 1sds:C, 1sds:B
4 5kzt:B 510 71 0.0955 0.0373 0.2676 1.1 5kzt:A
5 7yl4:A 472 48 0.0955 0.0403 0.3958 4.5 7yl4:B, 7yl5:A, 7yl5:B, 7yl6:A, 7yl6:B
6 3owa:C 587 40 0.0704 0.0239 0.3500 5.5 3owa:A, 3owa:B, 3owa:D
7 3cea:A 342 40 0.0754 0.0439 0.3750 7.2 3cea:B, 3cea:C, 3cea:D
8 7eip:A 966 106 0.1156 0.0238 0.2170 7.4 7eiq:A, 7eir:A, 7eis:A, 7yke:A
9 7b7z:A 340 50 0.0955 0.0559 0.3800 8.4 7b80:A, 6i7g:A, 6i7g:B, 6i7i:A, 6i7k:A, 6i7l:A, 4u07:A, 4u07:B, 4u0s:A, 4u0s:B, 4u0u:A, 4u0u:B, 4u0z:A, 4u0z:B, 4u0z:C, 4u0z:D, 4u0z:E, 4u0z:F, 4u0z:G, 4u0z:H, 6zmd:B
10 7jk2:B 285 45 0.0804 0.0561 0.3556 8.6
11 6j79:A 816 69 0.1106 0.0270 0.3188 8.8 1amo:A, 1amo:B, 1b1c:A, 1dve:A, 1dvg:A, 1dvg:B, 2dy5:A, 2e7e:A, 5emn:A, 5emn:B, 3es9:A, 3es9:B, 3es9:C, 5fa6:A, 5fa6:B, 4g7l:A, 4g7p:A, 4g7t:A, 4g7u:A, 4g8p:A, 4g8u:A, 4g8w:A, 4g98:A, 4g99:A, 3i9t:A, 3i9u:A, 1ivj:A, 1ix3:A, 1ix4:A, 1j02:A, 1j2c:A, 6j79:B, 6j7a:A, 6j7a:B, 6j7i:A, 6j7i:B, 1j9z:A, 1j9z:B, 1ja0:A, 1ja0:B, 1ja1:A, 1ja1:B, 7l18:AAA, 7l18:BBB, 4mec:A, 4mec:B, 4mec:C, 4mec:D, 4mec:E, 6njr:A, 6njr:B, 3ojw:A, 3ojx:A, 3qe2:A, 3qe2:B, 3qfc:A, 3qfc:B, 3qfr:A, 3qfr:B, 1ubb:A, 1ulx:A, 5urd:A, 5urd:B, 5ure:A, 5ure:B, 5urg:A, 5urg:B, 5urh:A, 5urh:B, 5uri:A, 5uri:B, 1vgi:A, 3wkt:A, 3wkt:B, 3wkt:C, 3wkt:D, 4y7c:A, 4y7c:B, 4y9r:A, 4y9r:B, 4y9u:A, 4y9u:B, 4yaf:A, 4yaf:B, 4yal:A, 4yal:B, 4yao:A, 4yao:B, 4yau:A, 4yau:B, 4yaw:A, 4yaw:B, 2zvu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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