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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ALSADIVGMHYRYPDHYEVEREKIREYAVAVQNDDAWYFEEDGAAELGYKGLLAPLTFICVFGYKAQAAFFKHANIATAE
AQIVQVDQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTNEEGDLVQETYTTLAGRAGEGFSDG

The query sequence (length=152) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4rlt:A 155 153 1.0000 0.9806 0.9935 1.93e-109 4rlu:A, 4rlw:A, 7svt:A, 7svt:H, 7svt:O, 7svt:V
2 4v12:A 337 141 0.3224 0.1454 0.3475 7.50e-21
3 6tl4:A 496 41 0.1118 0.0343 0.4146 0.15
4 1reo:A 484 42 0.0855 0.0269 0.3095 0.44 1tdk:A, 1tdn:A, 1tdo:A
5 8x2h:A 2363 36 0.0855 0.0055 0.3611 0.48 8jb5:A, 2vkd:A, 2vkd:B, 2vkd:C, 2vkh:A, 2vkh:B, 2vkh:C, 2vl8:A, 2vl8:B, 2vl8:C
6 8x2h:A 2363 42 0.0789 0.0051 0.2857 6.3 8jb5:A, 2vkd:A, 2vkd:B, 2vkd:C, 2vkh:A, 2vkh:B, 2vkh:C, 2vl8:A, 2vl8:B, 2vl8:C
7 3kve:A 484 42 0.0855 0.0269 0.3095 0.48 3kve:B, 3kve:C, 3kve:D
8 8x2i:A 2303 36 0.0855 0.0056 0.3611 0.48
9 8x2i:A 2303 42 0.0789 0.0052 0.2857 6.3
10 1f8r:A 483 42 0.0855 0.0269 0.3095 0.57 1f8r:B, 1f8r:C, 1f8r:D, 1f8s:A, 1f8s:B, 1f8s:C, 1f8s:D, 1f8s:E, 1f8s:F, 1f8s:G, 1f8s:H, 2iid:A, 2iid:B, 2iid:C, 2iid:D
11 7rzw:B 864 41 0.0987 0.0174 0.3659 1.1 7rzw:A
12 1nmo:A 247 105 0.1579 0.0972 0.2286 2.4 1nmo:B, 1nmo:C, 1nmo:D, 1nmo:E, 1nmo:F, 1nmp:A, 1nmp:B, 1nmp:C, 1nmp:D, 1nmp:E, 1nmp:F
13 6tby:AAA 320 59 0.1118 0.0531 0.2881 3.9 6tc5:AAA
14 8wp1:A 304 50 0.1250 0.0625 0.3800 3.9 8jpn:R
15 4our:A 448 40 0.0987 0.0335 0.3750 4.1 4our:B
16 8ykv:R 271 50 0.1250 0.0701 0.3800 4.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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