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BioLiP
>protein
ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKA
AVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLMEAIWTRFFPASEALRSVLAQGTLGDLRVARAEFGKNLTHV
PRAVDWAQAGGALLDLGIYCVQFISMVFGGQKPEKISVMGRRHETGVDDTVTVLLQYPGEVHGSFTCSITAQLSNTASVS
GTKGMAQLLNPCWCPTELVVKGEHKEFLLPPVPKNCNFDNGAGMSYEAKHVRECLRKGLKESPVIPLVESELLADILEEV
RRAIGVTFPQD

The query sequence (length=331) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2o4u:X 331 331 1.0000 1.0000 1.0000 0.0 2poq:X
2 2glx:A 332 253 0.2175 0.2169 0.2846 1.21e-23 2glx:B, 2glx:C, 2glx:D, 2glx:E, 2glx:F
3 4koa:A 333 254 0.2054 0.2042 0.2677 9.64e-20
4 3rc1:A 325 279 0.2387 0.2431 0.2832 1.90e-17 3rbv:A, 3rc2:A, 3rc7:A, 3rc9:A, 3rcb:A
5 5a03:C 336 310 0.2054 0.2024 0.2194 3.33e-15 5a02:A, 5a02:B, 5a02:C, 5a02:D, 5a02:E, 5a02:F, 5a03:A, 5a03:B, 5a03:D, 5a03:E, 5a03:F, 5a04:A, 5a04:B, 5a04:C, 5a04:D, 5a04:E, 5a04:F, 5a05:A, 5a05:C, 5a05:D, 5a05:E, 5a05:B, 5a05:F, 5a06:A, 5a06:B, 5a06:C, 5a06:D, 5a06:E, 5a06:F
6 4nhe:B 326 238 0.1843 0.1871 0.2563 4.42e-14 4nhe:A, 4nhe:C
7 1h6d:A 383 197 0.1450 0.1253 0.2437 6.32e-14 1evj:A, 1evj:B, 1evj:C, 1evj:D, 1h6a:A, 1h6a:B, 1h6b:A, 1h6b:B, 1h6c:A, 1h6c:B, 1h6d:C, 1h6d:B, 1h6d:D, 1h6d:E, 1h6d:G, 1h6d:F, 1h6d:H, 1h6d:I, 1h6d:K, 1h6d:J, 1h6d:L, 1ofg:A, 1ofg:D, 1ofg:B, 1ofg:C, 1ofg:E, 1ofg:F, 1ryd:A, 1ryd:B, 1rye:A, 1rye:D, 1rye:B, 1rye:C
8 7x2y:A 342 188 0.1571 0.1520 0.2766 1.15e-12 7x1x:A, 7x1x:B, 7x2y:B
9 6jw7:A 342 258 0.2024 0.1959 0.2597 1.68e-11 6jw6:A, 6jw6:B, 6jw7:B, 6jw8:A, 6jw8:B
10 3ec7:A 336 147 0.1299 0.1280 0.2925 6.09e-11 3ec7:B, 3ec7:C, 3ec7:D, 3ec7:E, 3ec7:F, 3ec7:G, 3ec7:H
11 8tdi:G 386 247 0.1934 0.1658 0.2591 1.88e-10 8tdi:L, 8tdi:J, 8tdi:A, 8tdi:C, 8tdi:D, 8tdi:E, 8tdi:F, 8tdi:H, 8tdi:I, 8tdi:B, 8tdi:K
12 1zh8:A 325 255 0.1813 0.1846 0.2353 5.13e-10 1zh8:B
13 7xre:C 363 136 0.1269 0.1157 0.3088 1.67e-09 7xr9:A, 7xr9:B, 7xr9:C, 7xr9:D, 7xr9:E, 7xr9:F, 7xre:A, 7xre:B, 7xre:D, 7xre:E, 7xre:F
14 3cea:A 342 170 0.1148 0.1111 0.2235 9.53e-09 3cea:B, 3cea:C, 3cea:D
15 6nor:A 349 205 0.1662 0.1576 0.2683 1.16e-08 6nor:B, 6nor:C, 6nor:D, 6nor:E, 6nor:F
16 6a3j:C 378 238 0.1511 0.1323 0.2101 1.38e-08 6a3g:A, 6a3g:B, 6a3g:C, 6a3g:D, 6a3i:A, 6a3i:B, 6a3i:C, 6a3i:D, 6a3j:A, 6a3j:B, 6a3j:D
17 6z3c:AAA 379 279 0.1934 0.1689 0.2294 1.67e-07 6z3b:A, 6z3b:B, 6z3c:BBB
18 4n54:A 340 248 0.1571 0.1529 0.2097 5.88e-07 4n54:B, 4n54:C, 4n54:D
19 3e18:A 348 136 0.1088 0.1034 0.2647 1.62e-06 3e18:B
20 4l8v:A 337 147 0.1088 0.1068 0.2449 3.08e-06 4l8v:B, 4l8v:C, 4l8v:D, 3nt2:A, 3nt2:B, 3nt4:A, 3nt4:B, 3nt5:A, 3nt5:B, 3ntq:A, 3ntq:B, 3ntr:A, 3ntr:B
21 5uhw:A 342 161 0.1088 0.1053 0.2236 4.53e-05 5uhw:B, 5uhz:A, 5uhz:B, 5ui9:A, 5ui9:B, 5uia:A, 5uia:B, 5uib:A, 5uib:B
22 6o15:A 355 229 0.1450 0.1352 0.2096 8.39e-05 6o15:B
23 5b3u:B 317 149 0.1148 0.1199 0.2550 2.87e-04 5b3v:B, 5b3v:A, 5b3v:C, 5b3v:D
24 9azo:A 315 113 0.0846 0.0889 0.2478 8.05e-04 9azo:B, 9azo:C, 9azo:D, 9azo:E, 9azo:F
25 4min:A 339 126 0.0876 0.0855 0.2302 0.002 4min:B, 4min:C, 4min:D, 4mio:A, 4mio:B, 4mio:C, 4mio:D, 4miy:A, 4miy:B, 4miy:C, 4miy:D, 4mjl:A, 4mjl:B, 4mjl:C, 4mjl:D
26 2h63:D 285 66 0.0695 0.0807 0.3485 0.002 2h63:A, 2h63:B, 2h63:C
27 6ktk:C 368 301 0.2054 0.1848 0.2259 0.002 6ktk:A, 6ktk:B, 6ktk:D, 6ktl:A, 6ktl:B, 6ktl:C, 6ktl:D, 5ya8:A, 5ya8:B, 5ya8:C, 5ya8:D, 5yap:A, 5yap:B, 5yap:C, 5yap:D, 5yaq:A, 5yaq:B, 5yaq:C, 5yaq:D
28 1lc3:A 292 93 0.0846 0.0959 0.3011 0.004 1lc0:A
29 7d5m:A 389 169 0.1208 0.1028 0.2367 0.005 7d5n:A, 7d5n:B
30 7cgq:A 306 104 0.0937 0.1013 0.2981 0.008 7cgq:B, 7cgq:C, 7cgq:D, 7cgr:A, 7cgr:B, 7cgr:C, 7cgr:D, 6jnk:A, 6jnk:B, 6jnk:C, 6jnk:D
31 3o9z:A 310 143 0.1148 0.1226 0.2657 0.010 3o9z:B, 3o9z:C, 3o9z:D, 3oa0:A, 3oa0:B, 3oa0:C, 3oa0:D
32 3q2k:C 347 260 0.1601 0.1527 0.2038 0.019 3q2k:A, 3q2k:B, 3q2k:D, 3q2k:F, 3q2k:G, 3q2k:H, 3q2k:I, 3q2k:J, 3q2k:M, 3q2k:N, 3q2k:O
33 3q2k:K 322 260 0.1601 0.1646 0.2038 0.021 3q2k:E, 3q2k:L, 3q2k:P
34 2ixa:A 426 154 0.1118 0.0869 0.2403 0.063 2ixb:A
35 3q2i:A 345 254 0.1511 0.1449 0.1969 0.15
36 1ghe:B 171 34 0.0483 0.0936 0.4706 0.16 1ghe:A, 1j4j:A, 1j4j:B
37 3dty:A 374 165 0.1027 0.0909 0.2061 0.16 3dty:E
38 4mag:A 307 29 0.0453 0.0489 0.5172 0.20 7a5q:A, 7a5q:B
39 7t3e:A 300 29 0.0393 0.0433 0.4483 1.4 7t3e:B
40 7dfp:A 335 63 0.0453 0.0448 0.2381 2.2
41 1zj8:A 546 54 0.0483 0.0293 0.2963 2.5 1zj8:B, 1zj9:A, 1zj9:B
42 4bjk:A 450 82 0.0544 0.0400 0.2195 2.6 4bjk:B, 4bjk:C, 4bjk:D, 3g1q:A, 3g1q:B, 3g1q:C, 3g1q:D, 4g3j:A, 4g3j:B, 4g3j:C, 4g3j:D, 4g7g:A, 4g7g:B, 4g7g:C, 4g7g:D, 3gw9:A, 3gw9:B, 3gw9:C, 3gw9:D, 3p99:A, 3p99:B, 3p99:C, 3p99:D, 3tik:A, 3tik:B, 3tik:C, 3tik:D, 2wv2:A, 2x2n:A, 2x2n:B, 2x2n:C, 2x2n:D
43 6cbp:A 235 64 0.0574 0.0809 0.2969 4.4 8saq:C, 8saq:H, 8saq:M, 8sar:D, 8sar:I, 8sar:N, 8sar:M, 8sb2:D, 8sb2:I, 8sb2:N
44 3i7v:A 134 39 0.0453 0.1119 0.3846 4.7 3i7v:B
45 5v8f:D 456 67 0.0604 0.0439 0.2985 7.2 7mca:D, 6rqc:D, 5zr1:D
46 6wgc:D 436 65 0.0574 0.0436 0.2923 8.8 7tjf:D, 7tjh:D, 7tji:D, 7tjj:D, 7tjk:D, 6wgg:D, 6wgi:D
47 8tdf:A 452 103 0.0725 0.0531 0.2330 9.5 8tdf:B, 8tdf:C, 8tdf:D, 8tdh:B, 8tdh:C, 8tdh:D, 8tdh:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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