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BioLiP
>protein
ALRTRLGEILRPLNAEYGKVVPGWGTTPIMGLTMVLFLVFLLIILQIYNSSLIIENVDVDWANAI

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8iwh:H 65 65 1.0000 1.0000 1.0000 8.02e-42 8iwh:h
2 6j3y:H 66 65 0.8769 0.8636 0.8769 1.39e-37 6j3y:h, 6j3z:H, 6j3z:h, 6j40:H, 6j40:h, 8j5k:H, 8j5k:h, 6jlu:H, 6jlu:h, 7vd5:H, 7vd5:h
3 8wql:HD 64 63 0.7692 0.7812 0.7937 3.46e-31 8wql:HE, 8wql:H1, 8wql:h1, 8wql:hD, 8wql:hE
4 7y5e:HL 66 63 0.8308 0.8182 0.8571 2.51e-28 8wb4:H, 8wb4:h, 8xlp:h, 8xlp:H, 8xr6:H, 8xr6:h, 7y5e:H6, 7y5e:h6, 7y5e:hL, 7y7a:H9, 7y7a:h9, 7y7a:hE, 7y7a:HE, 7y7a:HO, 7y7a:hO, 7y7a:HZ, 7y7a:hZ, 7y7a:Hm, 7y7a:hm
5 7n8o:H 63 63 0.7846 0.8095 0.8095 2.39e-25 7n8o:h, 7rcv:H, 7rcv:h, 8tow:H, 8tow:h, 6wj6:H
6 4yuu:h1 62 61 0.7231 0.7581 0.7705 2.49e-25 4yuu:H1, 4yuu:H2, 4yuu:h2
7 5xnl:H 60 57 0.5538 0.6000 0.6316 5.53e-24 5xnl:h, 5xnm:H, 5xnm:h, 6yp7:h, 6yp7:H
8 8c29:H 62 59 0.5692 0.5968 0.6271 6.15e-24 8c29:h
9 7oui:H 60 58 0.5385 0.5833 0.6034 3.95e-23 3jcu:H, 3jcu:h, 5mdx:H, 5mdx:h, 7oui:h
10 8bd3:H 67 63 0.5538 0.5373 0.5714 7.82e-23 8bd3:h
11 8kde:H 73 61 0.5692 0.5068 0.6066 4.20e-21 6kac:H, 6kac:h, 6kad:H, 6kad:h, 6kaf:H, 6kaf:h, 8r2i:H, 8zee:H
12 7pi0:H 67 60 0.5692 0.5522 0.6167 6.95e-21 7pi0:h, 7pi5:H, 7pi5:h, 7pin:H, 7pin:h, 7pin:H1, 7pin:h1, 7piw:H, 7piw:h, 7piw:H1, 7piw:h1, 7pnk:H, 7pnk:h
13 6dhe:H 65 61 0.6769 0.6769 0.7213 2.21e-19 3a0b:H, 3a0b:h, 3a0h:H, 3a0h:h, 2axt:H, 2axt:h, 5b5e:H, 5b5e:h, 5b66:H, 5b66:h, 7cji:H, 7cji:h, 7cjj:H, 7cjj:h, 7cou:H, 7cou:h, 7czl:H, 7czl:h, 7d1t:H, 7d1t:h, 7d1u:H, 7d1u:h, 6dhe:h, 6dhf:H, 6dhf:h, 6dhg:H, 6dhg:h, 6dhh:H, 6dhh:h, 6dho:H, 6dho:h, 6dhp:H, 6dhp:h, 7dxa:h, 7dxh:h, 5e79:H, 5e79:h, 5e7c:H, 5e7c:h, 7eda:H, 9evx:H, 9evx:h, 8ez5:H, 8ez5:h, 8f4c:H, 8f4c:h, 8f4d:H, 8f4d:h, 8f4e:H, 8f4e:h, 8f4f:H, 8f4f:h, 8f4g:H, 8f4g:h, 8f4h:H, 8f4h:h, 8f4i:H, 8f4i:h, 8f4j:H, 8f4j:h, 8f4k:H, 8f4k:h, 4fby:H, 4fby:W, 8gn0:H, 8gn0:h, 8gn1:H, 8gn1:h, 8gn2:H, 8gn2:h, 5gth:H, 5gth:h, 5gti:H, 5gti:h, 5h2f:H, 5h2f:h, 4il6:H, 4il6:h, 8ir5:H, 8ir5:h, 8ir6:H, 8ir6:h, 8ir7:H, 8ir7:h, 8ir8:H, 8ir8:h, 8ir9:H, 8ir9:h, 8ira:H, 8ira:h, 8irb:H, 8irb:h, 8irc:H, 8irc:h, 8ird:H, 8ird:h, 8ire:H, 8ire:h, 8irf:H, 8irf:h, 8irg:H, 8irg:h, 8irh:H, 8irh:h, 8iri:H, 8iri:h, 4ixq:H, 4ixq:h, 4ixr:H, 4ixr:h, 6jlj:H, 6jlj:h, 6jlk:H, 6jlk:h, 6jll:H, 6jll:h, 6jlm:H, 6jlm:h, 6jln:H, 6jln:h, 6jlo:H, 6jlo:h, 6jlp:H, 6jlp:h, 5kaf:H, 5kaf:h, 5kai:H, 5kai:h, 3kzi:H, 5mx2:H, 5mx2:h, 7nho:H, 7nhp:H, 7nhq:H, 4pbu:H, 4pbu:h, 4pj0:H, 4pj0:h, 7rf1:H, 7rf1:h, 7rf2:H, 7rf2:h, 7rf3:H, 7rf3:h, 7rf4:H, 7rf4:h, 7rf5:H, 7rf5:h, 7rf6:H, 7rf6:h, 7rf7:H, 7rf7:h, 7rf8:H, 7rf8:h, 4rvy:H, 4rvy:h, 1s5l:H, 1s5l:h, 5tis:H, 5tis:h, 4tnh:H, 4tnh:h, 4tni:H, 4tni:h, 4tnj:H, 4tnj:h, 4tnk:H, 4tnk:h, 4ub6:H, 4ub6:h, 4ub8:H, 4ub8:h, 5v2c:H, 5v2c:h, 4v62:AH, 4v62:BH, 4v82:AH, 4v82:BH, 6w1o:H, 6w1o:h, 6w1p:H, 6w1p:h, 6w1q:H, 6w1q:h, 6w1r:H, 6w1r:h, 6w1t:H, 6w1t:h, 6w1u:H, 6w1u:h, 6w1v:H, 6w1v:h, 5ws5:H, 5ws5:h, 5ws6:H, 5ws6:h, 3wu2:H, 3wu2:h, 7yq2:H, 7yq2:h, 7yq7:H, 7yq7:h, 5zzn:H, 5zzn:h
14 8eqm:H 65 50 0.4462 0.4462 0.5800 2.09e-17 8eqm:h
15 7ymi:H 68 62 0.4154 0.3971 0.4355 1.37e-10 7ymi:h, 7ymm:1H, 7ymm:2H, 7ymm:3H, 7ymm:4H
16 6bye:A 861 28 0.1538 0.0116 0.3571 1.9 6bye:B, 6byg:A, 6byg:B, 6byi:A, 6byi:B
17 5fcz:A 499 26 0.1692 0.0220 0.4231 1.9 4c7f:A, 4c7f:B, 4c7g:A, 1hp5:A, 1jak:A, 1m01:A, 1m03:A, 1m04:A
18 3ckq:A 302 34 0.2154 0.0464 0.4118 5.5 3ckn:A, 3cko:A, 3ckv:A
19 4dec:A 284 17 0.1538 0.0352 0.5882 5.8 4de7:A, 3e25:A, 5jsx:A, 5jt0:A, 5juc:A, 5jud:A, 4y6n:A, 4y6u:A, 4y7f:A, 4y7g:A, 4y9x:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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