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BioLiP
>protein
ALQNKEEEKKKVKKLQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLE
ANVRVNGETSFKNKW

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2kkh:A 95 95 1.0000 1.0000 1.0000 1.84e-65
2 6a71:B 71 67 0.2105 0.2817 0.2985 4.82e-05 6a72:A
3 8ioy:A 816 62 0.1895 0.0221 0.2903 0.23
4 4dy7:F 378 47 0.1895 0.0476 0.3830 0.23
5 1y3j:A 77 67 0.2105 0.2597 0.2985 0.24
6 1kvj:A 79 60 0.1579 0.1899 0.2500 0.32 3cjk:B, 2k1r:A, 5t7l:B
7 8q74:A 783 63 0.1368 0.0166 0.2063 0.51 8q75:A, 8q76:A
8 7si6:A 873 68 0.2105 0.0229 0.2941 0.86 7si3:A, 7si7:A
9 1kqk:A 80 73 0.2000 0.2375 0.2603 2.1
10 6p55:B 327 24 0.1158 0.0336 0.4583 2.8 6p52:A, 6p53:B, 6p54:A, 6p54:B, 6p55:A, 6xqv:A, 6xqv:B
11 3clh:A 308 30 0.1263 0.0390 0.4000 2.8 3clh:B
12 1j78:B 447 18 0.0947 0.0201 0.5000 4.3 1j7e:A, 1j7e:B
13 8g27:I 720 58 0.1579 0.0208 0.2586 4.6 8g27:C, 8g27:D, 8g2j:C, 8g2j:D, 8g2j:I, 6wlb:A, 6wlb:C, 6wlb:B
14 6xmg:A 638 28 0.1263 0.0188 0.4286 4.6 6xmf:A
15 8i16:A 639 28 0.1263 0.0188 0.4286 4.6
16 8i3q:A 595 28 0.1263 0.0202 0.4286 4.7
17 1s6u:A 76 65 0.1789 0.2237 0.2615 5.1
18 6e85:A 331 49 0.1368 0.0393 0.2653 5.9
19 5jp0:A 745 41 0.1368 0.0174 0.3171 6.7 5jp0:B
20 7plm:A 1177 81 0.2526 0.0204 0.2963 8.2 7plm:B
21 1b0p:A 1231 81 0.2526 0.0195 0.2963 8.2 1b0p:B, 2c3m:A, 2c3m:B, 2c3o:A, 2c3o:B, 2c3p:A, 2c3p:B, 2c3u:A, 2c3u:B, 2c3y:A, 2c3y:B, 2c42:A, 2c42:B, 1kek:A, 1kek:B, 2pda:A, 2pda:B, 2uza:A, 2uza:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218