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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ALQHSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSELTFSDYKTLCAVGDEMGNKNL
EFDQLIQNISPEINDILSIEMAEDEVKNKILRLITKEASLLTDKGSKDKSVVTELWKFEDKDRFARKRVKGRAFSYEFNR
LSKELQEELDRMIGHILRKS

The query sequence (length=180) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ntz:A 183 181 0.9667 0.9508 0.9613 7.72e-121 2ntz:B, 1zx4:A
2 3vwb:A 116 114 0.2944 0.4569 0.4649 4.79e-26 3w2a:A, 3w3c:A
3 3l4g:C 508 87 0.1111 0.0394 0.2299 0.83 3l4g:A, 3l4g:E, 3l4g:G, 3l4g:I, 3l4g:K, 3l4g:M, 3l4g:O
4 8dh3:E 825 98 0.1278 0.0279 0.2347 1.2 8dh4:M, 8dh5:E
5 8dh4:I 821 98 0.1278 0.0280 0.2347 1.2 8dh0:J
6 8dh3:M 775 111 0.1500 0.0348 0.2432 1.2 8dh0:N
7 1msw:D 863 98 0.1278 0.0267 0.2347 1.3 1cez:A, 8dh1:B, 8dh2:B, 8dh3:B, 8dh4:B, 8dh5:B, 3e2e:A, 3e3j:C, 3e3j:B, 1h38:A, 1h38:B, 1h38:C, 1h38:D, 2pi4:A, 2pi5:A, 1qln:A, 1s0v:A, 1s0v:B, 1s0v:C, 1s0v:D
8 4v8m:BJ 214 62 0.1111 0.0935 0.3226 1.5
9 8pv4:Lr 214 44 0.0889 0.0748 0.3636 2.8 8i9r:Lq, 8i9t:Lq, 8i9v:Lq, 8i9w:Lq, 8i9x:Lq, 8i9y:Lq, 8i9z:Lq, 8ia0:Lq, 8pv6:Lr, 8pv8:Lt, 8pvk:Lr
10 8dh0:F 796 111 0.1389 0.0314 0.2252 4.2
11 8dh2:E 841 42 0.0722 0.0155 0.3095 4.8 8dh0:B, 8dh1:E, 8dh1:I, 8dh2:I, 8dh3:I, 8dh4:E, 8dh5:I, 1s76:D, 1s77:D
12 3mkw:B 115 36 0.0722 0.1130 0.3611 6.3 3mky:B, 3mkz:A, 3mkz:N, 3mkz:U

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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