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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ALPRNVIPMPRSRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKILEVL

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6sw9:W 63 63 1.0000 1.0000 1.0000 2.88e-41 6swc:W, 6swd:W, 7zag:W, 7zah:W, 7zai:W, 7zhg:W
2 6tmf:Y 63 62 0.8254 0.8254 0.8387 4.06e-35 6skf:Ax, 6skg:Ax, 6th6:Ax
3 5jb3:W 63 62 0.8254 0.8254 0.8387 4.15e-35 5jbh:W, 4v4n:BW, 4v6u:AW
4 8hkx:S27E 59 52 0.4286 0.4576 0.5192 4.34e-14 8hky:S27E, 8hkz:S27E, 8hl1:S27E, 8hl2:S27E, 8hl3:S27E, 8hl4:S27E, 8hl5:S27E, 8wkp:S27E, 8wq2:S27E, 8wq4:S27E
5 4bts:A6 80 54 0.3651 0.2875 0.4259 1.86e-10 4bts:B6, 4bts:C6, 4bts:D6, 4v5o:A6, 4v5o:B6
6 5it7:b 82 50 0.3810 0.2927 0.4800 2.06e-10 7a1g:f, 7ajt:Db, 7aju:Db, 7b7d:f, 8bn3:D7, 8bqd:f, 8bqx:f, 8c00:f, 8c01:f, 8c83:f, 8cah:f, 8cas:f, 8cbj:b, 8ccs:3, 8cdl:3, 8cdr:3, 8ceh:3, 8cf5:3, 8cg8:3, 8cgn:3, 8civ:3, 8cku:3, 8cmj:3, 7d4i:Sc, 7d5t:Sc, 7d63:Sc, 5dat:D7, 5dat:d7, 5dc3:D7, 5dc3:d7, 5dge:D7, 5dge:d7, 5dgf:D7, 5dgf:d7, 5dgv:D7, 5dgv:d7, 6eml:f, 8eub:Bb, 8evp:Bb, 8evq:Bb, 8evr:Bb, 8evs:Bb, 8evt:Bb, 8ewb:Bb, 8ewc:Bb, 6fai:b, 5fci:D7, 5fci:d7, 5fcj:D7, 5fcj:d7, 6fyx:b, 6fyy:b, 6gq1:AR, 6gqb:AR, 6gqv:AR, 6gsm:b, 6gsn:b, 6hhq:c, 6hhq:d7, 5i4l:D7, 5i4l:d7, 6i7o:f, 6i7o:fb, 8i7j:b, 5it9:b, 3j6x:27, 3j6y:27, 3j77:27, 3j78:27, 3j80:b, 3j81:b, 3jam:b, 3jap:b, 5juo:YB, 5jup:YB, 5jus:YB, 5jut:YB, 5juu:YB, 8k2d:Sb, 8k82:Sb, 6ke6:Sc, 5ll6:f, 6lqp:Sc, 6lqq:Sc, 6lqr:Sc, 6lqs:Sc, 6lqt:Sc, 5lyb:D7, 5lyb:d7, 5m1j:b2, 5mc6:f, 5mei:d7, 5mei:c, 7mpi:Bb, 7mpj:Bb, 7n8b:Bb, 5ndg:D7, 5ndg:d7, 5ndv:D7, 5ndv:d7, 5ndw:D7, 5ndw:d7, 7nrc:Sf, 7nrd:Sf, 5obm:D7, 5obm:d7, 5on6:d7, 5on6:c, 7osa:eS27, 7osm:eS27, 6q8y:f, 6rbd:b, 6rbe:b, 7rr5:Sb, 8rw1:b, 6s47:Bc, 8s8d:b, 8s8e:b, 8s8f:b, 8s8g:b, 8s8h:b, 8s8i:b, 8s8j:b, 6snt:b, 6sv4:f, 6sv4:fb, 6sv4:fc, 6t4q:Sb, 6t7i:Sb, 6t7t:Sb, 6t83:bb, 6t83:2, 5tbw:c, 5tbw:d7, 6tb3:f, 5tga:D7, 5tga:d7, 5tgm:D7, 5tgm:d7, 6tnu:f, 4u3m:D7, 4u3m:d7, 4u3n:D7, 4u3n:d7, 4u3u:D7, 4u3u:d7, 4u4n:D7, 4u4n:d7, 4u4o:D7, 4u4o:d7, 4u4q:D7, 4u4q:d7, 4u4r:D7, 4u4r:d7, 4u4u:D7, 4u4u:d7, 4u4y:D7, 4u4y:d7, 4u4z:D7, 4u4z:d7, 4u50:D7, 4u50:d7, 4u51:D7, 4u51:d7, 4u52:D7, 4u52:d7, 4u53:D7, 4u53:d7, 4u55:D7, 4u55:d7, 4u56:D7, 4u56:d7, 4u6f:D7, 4u6f:d7, 4uer:6, 6uz7:b, 4v6i:AX, 4v88:Ab, 4v88:Cb, 4v8y:A1, 4v8z:A1, 4v92:Bb, 6wdr:b, 6woo:bb, 7wtl:Sb, 7wtm:Sb, 7wtn:Sb, 7wto:Sb, 7wtp:Sb, 7wtq:Sb, 7wtr:Sb, 5wyj:Sc, 5wyk:Sc, 6xiq:AR, 6xir:AR, 8y0u:Sb, 6y7c:b, 6z6j:Sb, 6z6k:Sb, 6zce:c, 7zpq:Ab, 6zqa:Db, 6zqb:Db, 6zqc:Db, 6zqd:Db, 6zqe:Db, 6zqf:Db, 6zqg:Db, 7zrs:Ab, 6zu9:f, 7zuw:Ab, 7zux:Db, 6zvi:L, 7zw0:sf
7 8ova:AW 85 52 0.3492 0.2588 0.4231 2.18e-10 7ase:S, 5opt:S, 8ove:AW, 4v8m:AW
8 8c3a:d 81 50 0.3651 0.2840 0.4600 2.37e-10 8c3a:DO, 8cq7:d, 8cq7:DO, 8cqw:d, 8cqw:DO, 8cre:d, 8cre:DO, 8oeq:d, 8oeq:DO, 7pzy:c, 7q08:c, 7q0f:c, 7q0p:c, 7q0r:c, 8q5i:c
9 7olc:Sb 81 50 0.3651 0.2840 0.4600 4.35e-09 7old:Sb, 8oo0:Sb, 7r81:c2, 6rxx:Cq, 7z3n:Sb, 7z3o:Sb
10 5xxu:b 79 49 0.3651 0.2911 0.4694 1.95e-08
11 8rxh:Sc 85 52 0.3175 0.2353 0.3846 7.59e-08 8a3w:Sc, 8a98:Sc, 6az1:c, 8ovj:Sc, 8rxx:Sc, 5t2a:AW
12 3j7a:4 76 49 0.3333 0.2763 0.4286 1.06e-07 3jbn:4, 3jbo:4, 3jbp:4, 6okk:d, 8tpu:S4
13 5xyi:b 82 59 0.3492 0.2683 0.3729 1.30e-07
14 8jiw:Bb 86 48 0.3492 0.2558 0.4583 2.17e-07 8auv:K, 8b2l:K1, 8ip8:xa, 8ip9:xa, 8ipa:xa, 8ipb:xa, 8r6f:b, 4v3p:SX, 4v7e:Bb
15 6zj3:Sc 84 42 0.3333 0.2500 0.5000 4.71e-07
16 6fec:Y 84 48 0.3333 0.2500 0.4375 5.91e-07 7a01:L3, 7a09:R, 5a2q:b, 5aj0:Bb, 9bdl:AS27, 9bdn:AS27, 9bdp:AS27, 8bhf:c3, 9bkd:H, 9bln:H, 8btk:AA, 7cpu:Sb, 7cpv:Sb, 4d5l:b, 4d61:b, 6d90:cc, 6d9j:cc, 9f1b:AA, 9f1c:AA, 9f1d:AA, 5flx:b, 6g18:b, 6g4s:b, 6g4w:b, 6g51:b, 6g53:b, 6g5h:b, 6g5i:b, 8g5y:Sb, 8g5z:Sb, 8g60:Sb, 8g61:Sb, 8g6j:Sb, 8glp:Sb, 6gz3:Bb, 6gz4:Bb, 6gz5:Bb, 6hcf:c1, 6hcj:c2, 6hcm:c1, 6hcq:c2, 8ifd:3P, 8ife:3P, 6ip5:3P, 6ip6:3P, 6ip8:3P, 3j7p:Sb, 3j7r:Sb, 3jag:bb, 3jah:bb, 3jai:bb, 3jaj:Sb, 3jan:Sb, 8jdj:AN, 8jdk:AN, 8jdl:AN, 8jdm:AN, 7jqb:e, 7jqc:e, 5k0y:Y, 8k2c:Sb, 7k5i:b, 4kzx:b, 4kzy:b, 4kzz:b, 5lks:Sb, 7ls1:S3, 7ls2:S3, 5lzs:bb, 5lzt:bb, 5lzu:bb, 5lzv:bb, 5lzw:bb, 5lzx:bb, 5lzy:bb, 5lzz:bb, 7mdz:bb, 7mq8:NQ, 7mq9:NQ, 7mqa:NQ, 6mtb:bb, 6mtc:bb, 6mtd:bb, 6mte:bb, 7nwg:c2, 7nwh:bb, 7nwi:bb, 7o7y:AA, 7o7z:AA, 7o80:AA, 7o81:AA, 5oa3:b, 6ole:Sb, 6olf:Sb, 6olg:Bb, 6oli:Sb, 6olz:Bb, 6om0:Sb, 6om7:Sb, 7oya:b2, 7oyb:b2, 7oyc:b2, 7oyd:Bb, 8oz0:M, 8p03:c, 8p09:c, 8p2k:AA, 6p4g:c, 6p4h:c, 6p5i:c, 6p5j:c, 6p5k:c, 6p5n:c, 8pj1:H, 8pj2:H, 8pj3:H, 8pj4:H, 8pj5:H, 8pj6:H, 8ppk:b, 8ppl:Ab, 8q7z:AA, 8q87:AA, 7qgg:Sb, 8qoi:Sb, 7qp6:H, 7qp7:H, 7qvp:Sb, 7qvp:Rb, 6qzp:Sb, 7r4x:b, 6r5q:JJ, 6r6g:JJ, 6r6p:JJ, 6r7q:JJ, 8rg0:H, 8scb:bb, 6sgc:c1, 7syg:c, 7syh:c, 7syi:c, 7syj:c, 7syk:c, 7syl:c, 7sym:c, 7syn:c, 7syo:c, 7syp:c, 7syq:c, 7syr:c, 7sys:c, 7syt:c, 7syu:c, 7syv:c, 7syw:c, 7syx:c, 5t2c:AV, 8t4s:b, 7toq:AS27, 7tor:AS27, 7tql:b, 7ucj:Bb, 7uck:Bb, 4ug0:Sb, 4ujc:Cb, 4ujd:Cb, 4uje:Bb, 4v6x:Ab, 5vyc:b1, 5vyc:b2, 5vyc:b3, 5vyc:b4, 5vyc:b5, 5vyc:b6, 6w2s:c, 6w2t:c, 7wts:b, 7wtt:b, 7wtu:b, 7wtv:b, 7wtw:b, 7wtx:b, 7wtz:b, 7wu0:b, 6xa1:Sb, 7xnx:Sb, 7xny:Sb, 8xsx:Sb, 8xsy:Sb, 8xsz:Sb, 8xxl:Sb, 8xxm:Sb, 8xxn:Sb, 6y0g:Sb, 8y0w:Sb, 8y0x:Sb, 6y2l:Sb, 6y57:Sb, 6yal:c, 6yam:c, 6yan:c, 6ybw:H, 8yoo:Sb, 8yop:Sb, 6z6l:Sb, 6z6m:Sb, 6z6n:Sb, 7zjw:SB, 7zjx:SB, 6zlw:b, 6zm7:Sb, 6zme:Sb, 6zmi:Sb, 6zmo:Sb, 6zmt:b, 6zmw:H, 6zn5:b, 6zoj:b, 6zok:b, 6zon:R, 6zp4:R, 6zuo:b, 6zv6:b, 6zvh:b, 6zvj:R, 6zvk:L3, 6zxd:b, 6zxe:b, 6zxf:b, 6zxg:b, 6zxh:b
17 8br8:Se 80 56 0.3016 0.2375 0.3393 1.67e-06 8brm:Se, 8bsi:Se, 8bsj:Se, 8btd:Se, 8btr:Se, 8fvy:b, 8g4s:b, 7pwf:b, 7pwo:b1
18 6rm3:SBB 82 49 0.2540 0.1951 0.3265 2.20e-06
19 4v6w:Ab 84 58 0.3651 0.2738 0.3966 3.65e-06 6xu6:Ab, 6xu7:Ab, 6xu8:Ab
20 9bh5:Ab 82 50 0.3175 0.2439 0.4000 4.46e-06 9cai:Ab
21 6zu5:SBB 80 56 0.2857 0.2250 0.3214 2.30e-05
22 8p5d:SBB 81 52 0.2222 0.1728 0.2692 1.11e-04 8p60:SBB, 8p60:RBB, 7qca:SBB
23 7qep:D7 82 42 0.1905 0.1463 0.2857 0.003
24 8x7u:D 654 33 0.1746 0.0168 0.3333 0.32 8x7u:E, 8x7u:C, 8x7u:B, 8x7u:F, 8x7u:A
25 3cxk:A 131 24 0.1905 0.0916 0.5000 0.70 3cez:A, 3cez:B, 3cxk:B
26 6zop:A 84 26 0.1905 0.1429 0.4615 1.2
27 1z8g:A 366 23 0.1587 0.0273 0.4348 2.5 5ce1:A, 1o5e:H, 1o5f:H, 1p57:B
28 8gvw:A 671 43 0.2063 0.0194 0.3023 3.2 6aei:A, 6aei:D, 6aei:B, 6aei:C, 7d4p:A, 7d4p:D, 7d4p:B, 7d4p:C, 7d4q:A, 7d4q:D, 7d4q:B, 7d4q:C, 7e4t:A, 7e4t:D, 7e4t:B, 7e4t:C, 8gvw:D, 8gvw:B, 8gvw:C, 7wdb:A, 7wdb:D, 7wdb:B, 7wdb:C
29 7x6i:A 687 43 0.2063 0.0189 0.3023 3.2 8gvx:B, 8gvx:A, 8gvx:D, 8gvx:C, 7x6c:C, 7x6c:B, 7x6c:A, 7x6c:D, 7x6i:D, 7x6i:B, 7x6i:C, 6ysn:A, 6ysn:B, 6ysn:C, 6ysn:D
30 4pof:A 255 33 0.1905 0.0471 0.3636 3.6 5iy0:A, 5iy0:B, 5iy0:C, 5iy0:D, 5iy0:E, 5iy0:F, 4pof:B, 4pof:C, 4pof:D, 4pof:E, 4pof:F, 4pog:A, 4pog:E, 4pog:F, 4pog:K, 4pog:L, 4pog:G, 4pog:H, 4pog:I, 4pog:J, 4pog:B, 4pog:C, 4pog:D, 4ywl:A, 4ywl:B, 4ywl:C, 4ywl:D, 4ywl:E, 4ywl:F, 4ywl:G, 4ywl:H, 4ywl:I, 4ywl:J, 4ywm:A, 4ywm:B, 4ywm:C, 4ywm:D, 4ywm:E, 4ywm:F, 4ywm:G, 4ywm:H, 4ywm:I, 4ywm:J
31 4gxb:A 263 45 0.1905 0.0456 0.2667 3.9 4tkn:A, 4tkn:B, 4tkn:C
32 7fac:A 524 21 0.1429 0.0172 0.4286 4.6
33 7m1a:AAA 177 14 0.1111 0.0395 0.5000 5.9 7m1a:BBB
34 7fa1:A 276 21 0.1429 0.0326 0.4286 6.8
35 4qbh:A 217 48 0.2540 0.0737 0.3333 7.1 4qbh:B, 4qbi:A, 4qbi:B, 1zin:A, 1zio:A, 1zip:A
36 8ppt:B 1191 29 0.1429 0.0076 0.3103 8.8 8ppu:B, 8ppv:B, 6t8h:B
37 6htj:A 119 38 0.2063 0.1092 0.3421 8.8 6htj:B
38 9bct:P 48 29 0.1587 0.2083 0.3448 9.3 9bcu:P, 4qiw:P, 4qiw:W

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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