Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ALPGAPPPPPPPPPPPPPGVPPAAAAAAAA

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8wa2:G 64 30 1.0000 0.4688 1.0000 1.83e-06 8wa2:H, 8wa2:I
2 9bdc:E 990 27 0.4000 0.0121 0.4444 2.0 9bdd:E, 4boc:A, 5ola:E, 5ola:F, 8u8u:E, 8u8v:E
3 8x19:I 864 25 0.3667 0.0127 0.4400 2.9 8x1c:I
4 1iwa:A 473 15 0.3333 0.0211 0.6667 2.9 1bwv:A, 1bwv:C, 1bwv:E, 1bwv:G, 4f0h:A, 1iwa:C, 1iwa:E, 1iwa:I, 1iwa:K, 1iwa:M, 1iwa:O
5 8x15:I 792 25 0.3667 0.0139 0.4400 3.2
6 1gk8:A 469 15 0.3000 0.0192 0.6000 7.0 3axm:A, 3axm:B, 3axm:C, 3axm:D, 3axm:E, 3axm:F, 3axm:G, 3axm:H, 1gk8:C, 1gk8:E, 1gk8:G, 4hhh:A, 4hhh:B, 4hhh:C, 4hhh:D, 1ir2:A, 1ir2:E, 1ir2:B, 1ir2:F, 1ir2:C, 1ir2:G, 1ir2:D, 1ir2:H, 1ir2:S, 1ir2:W, 1ir2:T, 1ir2:X, 1ir2:U, 1ir2:Y, 1ir2:V, 1ir2:Z, 7jfo:O, 7jfo:E, 7jfo:C, 7jfo:I, 7jfo:G, 7jfo:M, 7jfo:A, 4mkv:A, 4mkv:B, 4mkv:C, 4mkv:D, 8q05:A, 1rlc:L, 1uw9:A, 1uw9:B, 1uw9:E, 1uw9:K, 1uw9:H, 1uw9:O, 1uw9:V, 1uw9:R, 1uwa:A, 1uwa:O, 1uwa:B, 1uwa:E, 1uwa:H, 1uwa:V, 1uwa:K, 1uwa:R, 1uzd:A, 1uzd:B, 1uzd:E, 1uzd:K, 1uzd:H, 1uzd:R, 1uzd:O, 1uzd:V, 1uzh:A, 1uzh:B, 1uzh:E, 1uzh:K, 1uzh:H, 1uzh:R, 1uzh:O, 1uzh:V, 2v63:A, 2v63:B, 2v63:C, 2v63:D, 2v63:E, 2v63:F, 2v63:G, 2v63:H, 2v67:A, 2v67:B, 2v67:C, 2v67:D, 2v67:E, 2v67:F, 2v67:G, 2v67:H, 2v68:A, 2v68:B, 2v68:C, 2v68:D, 2v68:E, 2v68:F, 2v68:G, 2v68:H, 2v69:A, 2v69:B, 2v69:C, 2v69:D, 2v69:E, 2v69:F, 2v69:G, 2v69:H, 2v6a:A, 2v6a:B, 2v6a:C, 2v6a:D, 2v6a:E, 2v6a:F, 2v6a:G, 2v6a:H, 2vdh:A, 2vdh:B, 2vdh:C, 2vdh:D, 2vdh:E, 2vdh:F, 2vdh:G, 2vdh:H, 2vdi:A, 2vdi:B, 2vdi:C, 2vdi:D, 2vdi:E, 2vdi:F, 2vdi:G, 2vdi:H

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218