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BioLiP
>protein
ALMVTREDGSFLIDGTLPIEELREVLGAENNYHTLAGMCISYFGRIPHVGEYFDWAGWRIEIVDLDGARIDKLLLQRLN

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2oai:A 80 79 0.9873 0.9750 0.9873 4.37e-52 2r8d:A
2 2pls:I 86 83 0.4304 0.3953 0.4096 9.14e-20 2pls:G, 2pls:H, 2pls:J
3 3ded:C 91 83 0.4430 0.3846 0.4217 1.06e-18 3ded:A, 3ded:B, 3ded:D, 3ded:E, 3ded:F
4 2p4p:B 77 72 0.2658 0.2727 0.2917 1.34e-07
5 3lae:A 81 65 0.2025 0.1975 0.2462 0.11
6 6gxv:A 481 51 0.2278 0.0374 0.3529 0.36 6gxv:B, 6gya:A, 6gya:B, 6gya:C, 6gya:D
7 1ud2:A 480 44 0.2152 0.0354 0.3864 0.79 1ud3:A, 1ud4:A, 1ud5:A, 1ud8:A
8 4i58:A 451 27 0.1519 0.0266 0.4444 2.0 4i58:B, 4i58:C, 4i58:D, 4i59:A, 4i59:B, 4i59:C, 4i59:D
9 2taa:A 478 23 0.1139 0.0188 0.3913 2.4 2guy:A, 2gvy:A, 2gvy:B, 3kwx:A, 7p4w:A, 2taa:B, 2taa:C, 6taa:A, 7taa:A, 3vx0:A, 3vx1:A, 6xsj:A, 6xsj:B, 6xsv:A, 6yq7:A, 6yq7:B, 6yq9:AAA, 6yq9:BBB, 6yqa:AAA, 6yqa:BBB, 6yqb:AAA, 6yqb:BBB, 6yqc:AAA, 6yqc:BBB
10 5a2a:A 452 28 0.1646 0.0288 0.4643 2.9 5a2b:A, 5a2c:A
11 6sau:B 442 22 0.1139 0.0204 0.4091 3.5 6sau:A
12 1v03:A 487 35 0.1392 0.0226 0.3143 4.0
13 7nsh:BC 700 15 0.0886 0.0100 0.4667 4.2 7l20:w
14 5kqa:A 110 50 0.2025 0.1455 0.3200 6.6
15 2die:A 481 25 0.1139 0.0187 0.3600 7.5
16 8any:A5 581 30 0.1392 0.0189 0.3667 8.2
17 3bc9:A 585 20 0.1139 0.0154 0.4500 8.2 3bcd:A, 3bcf:A
18 7lo5:A 1016 23 0.1266 0.0098 0.4348 8.4 7lo5:B, 7lo5:C, 7lo5:D, 7lvv:A, 7lvv:B, 7lvv:C, 7lvv:D
19 5t62:W 306 19 0.1013 0.0261 0.4211 8.8
20 8jjm:A 484 23 0.1139 0.0186 0.3913 8.9 8jjm:B
21 2y9z:B 595 12 0.0633 0.0084 0.4167 9.7
22 2gjp:A 481 25 0.1266 0.0208 0.4000 9.7 2gjr:A, 1w9x:A
23 6qtz:o 325 19 0.1013 0.0246 0.4211 9.8 6qik:o, 6ri5:o, 6rzz:o, 6s05:o

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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