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BioLiP
>protein
ALLTPDDLININMQLQKADSAVQEVTGLDIKGICKALYGTFSSSEKVGIVPVTSGNGIIGNFSASLHAITQYFGFDSFVT
DMPDVSGYYEAVQNGAEIILMADDRTFLAHNLKNGKMANNQPCTGIIYAEIASRYLKADSKDVLVVGLGKVGFPGAEHLV
QKDFRVYGYDADETLLERATSNLGIIPFDPANPKKFSIIFEATPCANTIPEAVLSENCVLSTPGIPCAISEELRDKYEVQ
LIAEPLGIGTASMLYSVL

The query sequence (length=258) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4q3a:C 260 258 1.0000 0.9923 1.0000 0.0 4j43:A, 4j43:B, 4j49:A, 4j49:B, 4j4b:A, 4j4b:B, 4j4h:A, 4j4h:B, 4j4h:C, 4j4h:D, 4jk3:A, 4jk3:B, 4q39:A, 4q39:B, 4q3a:A, 4q3a:B, 4q3a:D, 4q3b:A, 4q3b:B, 4q3b:C, 4q3b:D, 4q3c:A, 4q3c:B, 4q3c:C, 4q3c:D, 4q3d:A, 4q3d:B, 4q3d:C, 4q3d:D, 4q3e:A, 4q3e:B
2 9boh:A 402 101 0.1279 0.0821 0.3267 0.84 9boh:B, 9bow:A, 9bow:B, 9bpe:A, 9bpe:B, 2dkj:A, 2dkj:B, 8ssy:A, 8ssy:B, 8sui:B
3 5je8:B 294 33 0.0465 0.0408 0.3636 1.1 5je8:A, 5je8:C, 5je8:D
4 4om8:A 309 45 0.0543 0.0453 0.3111 1.5 4om8:B
5 6az0:C 439 76 0.1085 0.0638 0.3684 1.8 6az0:D, 6az0:A, 6az0:B, 6az0:E, 6az0:F
6 6rxt:UL 785 56 0.0814 0.0268 0.3750 3.2 6rxu:UL, 6rxv:UL, 6rxx:UL, 6rxy:UL, 6rxz:UL
7 3ggg:D 293 48 0.0698 0.0614 0.3750 3.3 2g5c:A, 2g5c:B, 2g5c:C, 2g5c:D, 3ggg:A, 3ggg:B, 3ggg:C, 3ggo:A, 3ggo:B, 3ggo:D, 3ggo:C, 3ggp:A, 3ggp:B, 3ggp:D, 3ggp:C
8 1t3q:B 786 121 0.1279 0.0420 0.2727 3.8 1t3q:E
9 7h6j:A 163 47 0.0543 0.0859 0.2979 4.2 3gpo:A, 3gpo:B, 3gpo:C, 3gpo:D, 3gpq:A, 3gpq:B, 7h6k:C, 7h6l:C, 7h6m:A, 7h6m:B, 7h6n:A, 7h6o:A, 7h6o:C, 7h6p:C, 7h6q:A, 7h6q:C, 7h6q:D, 7h6r:B, 7h6r:C, 7h6r:D, 7h6s:C, 7h6t:C, 7h6u:A, 7h6u:B, 7h6v:D, 7h6w:C, 7h6x:A, 7h6x:B, 7h6x:C, 7h6x:D, 7h6y:A, 7h6y:C, 7h6z:A, 7h6z:B, 7h70:A, 7h70:C, 7h71:D, 7h72:A, 7h72:D, 7h73:A, 7h73:B, 7h73:C, 7h74:A, 7h74:B, 7h74:D, 7h75:C, 7h76:A, 7h76:B, 7h76:C, 7h77:D, 7h78:A, 7h78:B, 7h79:B, 7h79:C, 7h79:D, 7h7a:C, 7h7b:A, 7h7c:C, 7h7d:B, 7h7e:C, 7h7f:A, 7h7f:C, 7h7f:D, 7h7g:A, 7h7g:B, 7h7g:C, 7h7g:D, 7h7h:A, 7h7i:A, 7h7j:A, 7h7j:B, 7h7j:C, 7h7j:D, 7h7k:A, 7h7k:B, 7h7k:C, 7h7k:D, 7h7l:A, 7h7l:C, 7h7l:D, 7h7m:A, 7h7m:B, 7h7m:C, 7h7n:A, 7h7n:D, 7h7o:A, 7h7o:B, 7h7o:C, 7h7p:A, 7h7p:B, 7h7p:D, 7h7q:B, 7h7q:C, 7h7q:D, 7h7r:A, 7h7r:C, 7h7r:D, 7h7s:B, 7h7s:C, 7h7s:D, 7h7t:A, 7h7t:C, 7h7t:D, 7h7u:B, 7h7u:C, 7h7v:A, 7h7v:B, 7h7v:D, 7h7w:B, 7h7x:C, 7h7x:D, 7h7y:B, 7h7y:D, 7h7z:A, 7h7z:B, 7h7z:C, 7h7z:D, 7h80:A, 7h80:B, 7h80:C, 7h80:D, 7h81:A, 7h81:B, 7h81:C, 7h81:D, 7h82:A, 7h82:B, 7h82:D, 7h83:A, 7h83:B, 7h83:C, 7h83:D, 7h84:A, 7h84:B, 7h84:C, 7h84:D, 7h85:A, 7h85:C, 7h86:A, 7h86:B, 7h86:C, 7h86:D, 7h87:A, 7h87:B, 7h87:C, 7h87:D, 7h88:A, 7h88:B, 7h88:C, 7h88:D, 7h89:A, 7h89:B, 7h89:C, 7h89:D, 7h8a:A, 7h8a:C, 7h8b:A, 7h8b:B, 7h8b:C, 7h8b:D, 7h8c:A, 7h8c:B, 7h8c:C, 7h8c:D, 7h8d:A, 7h8d:B, 7h8e:A, 7h8e:B, 7h8e:C, 7h8e:D, 7h8f:B, 7h8g:A, 7h8g:B, 7h8g:C, 7h8g:D, 7h8h:C, 7h8i:A, 7h8i:C, 7h8i:D, 7h8j:A, 7h8j:B, 7h8j:C, 7h8j:D, 7h8k:A, 7h8k:B, 7h8k:C, 7h8k:D, 7h8l:A, 7h8l:B, 7h8l:C, 7h8l:D, 7h8m:A, 7h8m:B, 7h8m:C, 7h8m:D, 7h8n:A, 7h8n:B, 7h8o:B, 7h8o:C, 7h8o:D, 7h8p:A, 7h8p:B, 7h8p:C, 7h8p:D, 7h8q:D, 7h8r:A, 7h8r:B, 7h8r:D, 7h8s:B, 7h8s:C, 7h8s:D, 7h8t:B, 7h8t:C, 7h8t:D, 7h8u:A, 7h8u:B, 7h8u:C, 7h8u:D, 7h8v:C, 7h8v:D, 7h8w:A, 7h8w:C, 7h8w:D, 7h8x:D, 7h8y:A, 7h8y:B, 7h8y:C, 7h8y:D, 7h8z:B, 7h8z:C, 7h8z:D, 7h90:C, 7h90:D, 7h91:B, 7h91:C, 7h92:D, 7h93:A, 7h93:C, 7h94:C, 7h95:A, 7h95:B, 7h95:C, 7h95:D, 7h96:A, 7h96:B, 7h96:C, 7h96:D, 7h97:A, 7h97:D, 7h98:A, 7h98:B, 7h98:C, 7h98:D, 7h99:A, 7h99:B, 7h9a:A, 7h9a:B, 7h9a:C, 7h9a:D, 7h9b:A, 7h9b:B, 7h9b:C, 7h9b:D, 7h9c:A, 7h9c:C, 7h9d:C, 7h9e:B, 7h9e:D, 7h9f:C, 7h9g:A, 7h9g:B, 7h9g:C, 7h9g:D, 7h9h:A, 7h9h:B, 7h9h:D, 7h9i:A, 7h9i:B, 7h9i:C, 7h9i:D, 7h9j:A, 7h9j:B, 7h9j:C, 7h9j:D, 4tu0:D, 4tu0:A, 6vuq:A, 6vuq:B, 6vuq:C, 6vuq:D, 6w0t:A, 6w0t:B, 6w0t:C, 6w0t:D, 6w7h:A, 6w7h:B, 6w7h:C, 6w7h:D, 6w8k:A, 6w8k:B, 6w8k:C, 6w8k:D, 6w8m:A, 6w8m:B, 6w8m:C, 6w8m:D, 6w8q:A, 6w8q:B, 6w8q:C, 6w8q:D, 6w8y:A, 6w8y:B, 6w8y:C, 6w8y:D, 6w8z:A, 6w8z:B, 6w8z:C, 6w8z:D, 6w91:A, 6w91:B, 6w91:C, 6w91:D
10 1ig0:B 319 55 0.0620 0.0502 0.2909 5.3 1ig0:A
11 4mcw:B 363 100 0.1085 0.0771 0.2800 5.9 4mcw:A, 4mdz:A, 4mdz:B, 4me4:A, 4me4:B
12 4x9m:A 384 66 0.0891 0.0599 0.3485 5.9 4x9n:A
13 4g4p:A 235 42 0.0543 0.0596 0.3333 5.9
14 2rir:E 298 82 0.0930 0.0805 0.2927 6.1 2rir:A, 2rir:B, 2rir:C, 2rir:D, 2rir:F, 2rir:G, 2rir:H
15 1lss:A 132 41 0.0388 0.0758 0.2439 6.2 1lss:B, 1lss:C, 1lss:D
16 6k0v:A 562 59 0.0620 0.0285 0.2712 7.7 6k0m:A, 6k0n:A, 6k0p:A, 6k0q:A, 6k0s:A, 6k0u:A, 6k0v:B, 6k0v:C, 6k0v:D
17 6smz:C 295 80 0.0891 0.0780 0.2875 8.5 6smy:A, 6smy:B, 6smy:C, 6smy:D, 6smz:A, 6smz:B, 6smz:D
18 7s0w:B 499 27 0.0426 0.0220 0.4074 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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