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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ALLNIFDIAGSALAAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQVDAAATGGVKVASVIESQAPEKLVYEPGNPL
ADANGYVKMPNVDVVGEMVNTMSASRSYQANIEVLNTVKSMMLKTLTLG

The query sequence (length=129) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8wk3:V 133 132 1.0000 0.9699 0.9773 3.05e-88 7cg0:h, 7cg0:f, 7cg0:i, 7cg0:j, 7cg0:p, 7cgo:h, 7cgo:f, 7cgo:i, 7cgo:j, 7cgo:p, 7e80:h, 7e80:f, 7e80:i, 7e80:j, 7e80:p, 7e82:h, 7e82:f, 7e82:i, 7e82:j, 7e82:p, 8wk3:W, 8wk3:X, 8wk3:Y, 8wk3:Z, 8wk3:a, 8wkk:V, 8wkk:a, 8wkk:W, 8wkk:X, 8wkk:Y, 8wkk:Z, 8wkq:V, 8wkq:a, 8wkq:W, 8wkq:X, 8wkq:Y, 8wkq:Z, 8wl2:BA, 8wl2:BF, 8wl2:BB, 8wl2:BC, 8wl2:BD, 8wl2:BE, 8wlh:V, 8wlh:a, 8wlh:W, 8wlh:X, 8wlh:Y, 8wlh:Z, 8wln:V, 8wln:a, 8wln:W, 8wln:X, 8wln:Y, 8wln:Z, 8wlq:V, 8wlq:a, 8wlq:W, 8wlq:X, 8wlq:Y, 8wlq:Z, 8wlt:BA, 8wlt:BF, 8wlt:BB, 8wlt:BC, 8wlt:BD, 8wlt:BE, 8wo5:BA, 8wo5:BF, 8wo5:BB, 8wo5:BC, 8wo5:BD, 8wo5:BE, 8woe:BA, 8woe:BF, 8woe:BB, 8woe:BC, 8woe:BD, 8woe:BE
2 8wkk:u 254 44 0.1240 0.0630 0.3636 0.006 8wl2:AI, 8woe:AI
3 1s9i:A 303 55 0.1163 0.0495 0.2727 0.053 1s9i:B
4 8wk3:Q 119 115 0.2403 0.2605 0.2696 0.32 7cg0:k, 7cg0:n, 7cg0:o, 7cgo:k, 7cgo:n, 7cgo:o, 7e80:k, 7e80:n, 7e80:o, 7e82:k, 7e82:n, 7e82:o, 8wk3:R, 8wk3:S, 8wk3:T, 8wkk:Q, 8wkk:R, 8wkk:S, 8wkk:T, 8wlh:Q, 8wlh:R, 8wlh:S, 8wlh:T, 8wlq:Q, 8wlq:R, 8wlq:S, 8wlq:T
5 1f9w:A 300 62 0.1395 0.0600 0.2903 0.41 1f9w:B
6 1zap:A 341 39 0.1163 0.0440 0.3846 0.45 1eag:A, 3pvk:A, 3q70:A
7 8wkq:Q 134 130 0.2713 0.2612 0.2692 0.82 8wkq:R, 8wkq:S, 8wkq:T, 8wkq:U, 8wl2:A6, 8wl2:A7, 8wl2:A8, 8wl2:A9, 8wl2:A0, 8wln:Q, 8wln:R, 8wln:S, 8wln:T, 8wln:U, 8wlt:A6, 8wlt:A7, 8wlt:A8, 8wlt:A9, 8wlt:A0, 8wo5:A6, 8wo5:A7, 8wo5:A8, 8wo5:A9, 8wo5:A0, 8woe:A6, 8woe:A7, 8woe:A8, 8woe:A9, 8woe:A0
8 7btb:m 469 33 0.1163 0.0320 0.4545 1.7 7bt6:m, 6ft6:m, 3jct:m, 6m62:m, 7oh3:m, 7ohq:m, 7oht:m, 7ug6:m, 7uoo:m, 7uqb:m, 7uqz:m, 7uui:m, 7v08:m, 6ylg:m, 6ylh:m
9 6sxu:AAA 500 26 0.0853 0.0220 0.4231 1.8 1pz2:A, 1pz2:B, 1qw8:A, 1qw8:B, 1qw9:A, 1qw9:B, 6sxu:BBB, 6sxv:A, 6sxv:B
10 7cg0:m 106 115 0.2636 0.3208 0.2957 4.1 7cg0:l, 7cgo:m, 7cgo:l, 7e80:m, 7e80:l, 7e82:m, 7e82:l, 8wk3:U, 8wkk:U, 8wlh:U, 8wlq:U
11 4gkr:B 307 59 0.1085 0.0456 0.2373 5.7 4gkr:A
12 8csz:D 494 24 0.0775 0.0202 0.4167 7.3
13 6gej:Y 447 74 0.1473 0.0425 0.2568 8.3 8ets:W, 8ets:U, 8ets:Y, 8etu:W, 8etu:U, 8etu:Y, 8etw:W, 8etw:U, 8etw:Y, 8eu9:W, 8eu9:U, 8eu9:Y, 8euf:W, 8euf:U, 8euf:Y, 6gej:U, 6gej:W, 6gen:U, 6gen:W, 6gen:Y
14 8ctl:D 401 24 0.0775 0.0249 0.4167 8.7 7utn:D, 7xht:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218